Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p39030 Brassica napus HOM05D005824 ORTHO05D007029 0.0e+00 1437.2 828 100.0
BraA02t08872Z Brassica rapa HOM05D005824 ORTHO05D007029 0.0e+00 1389.8 829 97.3
BolC2t11924H Brassica oleracea HOM05D005824 ORTHO05D007029 0.0e+00 1251.1 852 85.8
C02p58640 Brassica napus HOM05D005824 ORTHO05D007029 0.0e+00 1248.4 849 86.0
BcaNung06222 Brassica carinata HOM05D005824 ORTHO05D007029 0.0e+00 1207.2 846 84.2
AL6G38630 Arabidopsis lyrata HOM05D005824 ORTHO05D007029 4.1e-252 875.2 933 59.2
Sp2g21220 Schrenkiella parvula HOM05D005824 ORTHO05D007029 2.4e-244 849.4 882 58.2
Thhalv10003721m.g Eutrema salsugineum HOM05D005824 ORTHO05D007029 1.3e-237 827.0 868 58.4
Carub.0006s2449 Capsella rubella HOM05D005824 ORTHO05D007029 4.7e-224 781.9 858 55.7
CARHR186810 Cardamine hirsuta HOM05D005824 ORTHO05D007029 2.7e-219 766.1 871 56.5
AT5G26760 Arabidopsis thaliana HOM05D005824 ORTHO05D007029 1.1e-212 744.2 890 53.5
Aa31LG11G9880 Aethionema arabicum HOM05D005824 ORTHO05D007029 1.9e-201 706.8 849 52.9
THA.LOC104821746 Tarenaya hassleriana HOM05D005824 ORTHO05D007029 2.1e-171 607.1 869 46.0
BolC7t44682H Brassica oleracea HOM05D005824 ORTHO05D007029 1.1e-145 521.5 895 43.2
BcaNung03676 Brassica carinata HOM05D005824 ORTHO05D007029 3.4e-142 510.0 481 64.0
C07p41490 Brassica napus HOM05D005824 ORTHO05D007029 2.1e-139 500.7 886 42.0
Cc02_g35570 Coffea canephora HOM05D005824 ORTHO05D007029 1.6e-126 458.0 859 39.0
Lj3g0001001 Lotus japonicus HOM05D005824 ORTHO05D007029 4.5e-126 456.4 858 37.5
Lj5g0026124 Lotus japonicus HOM05D005824 ORTHO05D007029 7.7e-126 455.7 859 38.0
Lalb_Chr02g0154321 Lupinus albus HOM05D005824 ORTHO05D007029 3.8e-125 453.4 857 38.3
Sabra15G0009000 Salix brachista HOM05D005824 ORTHO05D007029 5.0e-125 453.0 855 38.0
arahy.Tifrunner.gnm1.ann1.E5V6X9 Arachis hypogaea HOM05D005824 ORTHO05D007029 1.1e-124 451.8 859 37.5
Potri.015G010900 Populus trichocarpa HOM05D005824 ORTHO05D007029 1.9e-124 451.1 854 37.2
CiPaw.10G020000 Carya illinoinensis HOM05D005824 ORTHO05D007029 5.5e-124 449.5 859 37.4
QL07p026733 Quercus lobata HOM05D005824 ORTHO05D007029 9.4e-124 448.7 857 37.2
Cpa.g.sc48.209 Carica papaya HOM05D005824 ORTHO05D007029 3.6e-123 446.8 858 36.7
GSVIVG01031305001 Vitis vinifera HOM05D005824 ORTHO05D007029 3.6e-123 446.8 854 36.7
arahy.Tifrunner.gnm1.ann1.S86EGP Arachis hypogaea HOM05D005824 ORTHO05D007029 4.7e-123 446.4 861 37.6
TPR.G21237 Trifolium pratense HOM05D005824 ORTHO05D007029 8.0e-123 445.7 869 38.0
Dinv24497 Davidia involucrata HOM05D005824 ORTHO05D007029 2.0e-121 441.0 832 36.8
Psat6g118640 Pisum sativum HOM05D005824 ORTHO05D007029 2.6e-121 440.7 863 37.1
CSS0029355 Camellia sinensis var. sinensis HOM05D005824 ORTHO05D007029 9.8e-121 438.7 854 37.5
TPR.G12910 Trifolium pratense HOM05D005824 ORTHO05D007029 1.7e-120 438.0 859 37.3
Glyma.10G084300 Glycine max HOM05D005824 ORTHO05D007029 2.2e-120 437.6 862 36.7
VMungo0720G2244 Vigna mungo HOM05D005824 ORTHO05D007029 2.2e-120 437.6 856 37.7
Glyma.02G192500 Glycine max HOM05D005824 ORTHO05D007029 3.7e-120 436.8 856 36.7
Gohir.A03G155800 Gossypium hirsutum HOM05D005824 ORTHO05D007029 1.1e-119 435.3 862 36.7
Medtr1g055080 Medicago truncatula HOM05D005824 ORTHO05D007029 1.2e-118 431.8 853 36.3
Eucgr.B01798 Eucalyptus grandis HOM05D005824 ORTHO05D007029 2.7e-118 430.6 866 35.0
Gorai.005G200700 Gossypium raimondii HOM05D005824 ORTHO05D007029 3.5e-118 430.3 860 35.8
AUR62006798 Chenopodium quinoa HOM05D005824 ORTHO05D007029 4.5e-118 429.9 859 37.6
MBI19_g32704_MAGBIO Magnolia biondii HOM05D005824 ORTHO05D007029 1.3e-117 428.3 849 36.2
Sopen01g044470 Solanum pennellii HOM05D005824 ORTHO05D007029 1.3e-117 428.3 853 36.6
Ca_11665_v3 Cicer arietinum L. HOM05D005824 ORTHO05D007029 6.5e-117 426.0 858 36.8
PGSC0003DMG400018251 Solanum tuberosum HOM05D005824 ORTHO05D007029 4.2e-116 423.3 851 36.1
AUR62000450 Chenopodium quinoa HOM05D005824 ORTHO05D007029 1.6e-115 421.4 867 37.3
Hund21844 Selenicereus undatus HOM05D005824 ORTHO05D007029 3.6e-115 420.2 883 35.2
Thecc.09G352900 Theobroma cacao HOM05D005824 ORTHO05D007029 8.0e-115 419.1 860 35.9
CAN.G1374.10 Capsicum annuum HOM05D005824 ORTHO05D007029 4.0e-114 416.8 851 36.5
Oeu061927.1 Olea europaea HOM05D005824 ORTHO05D007029 5.2e-114 416.4 896 34.5
Rhsim11G0099700 Rhododendron simsii HOM05D005824 ORTHO05D007029 8.8e-114 415.6 856 34.9
EL10Ac4g09532 Beta vulgaris HOM05D005824 ORTHO05D007029 1.2e-113 415.2 843 37.4
Migut.B00860 Erythranthe guttata HOM05D005824 ORTHO05D007029 3.7e-112 410.2 836 35.2
Cfa020078 Carpinus fangiana HOM05D005824 ORTHO05D007029 4.9e-112 409.8 855 35.4
PSO339G3868 Papaver somniferum HOM05D005824 ORTHO05D007029 4.9e-112 409.8 849 35.0
Aqoxy2G02580 Aquilegia oxysepala HOM05D005824 ORTHO05D007029 6.3e-112 409.5 853 35.2
Nitab4.5_0009690g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 6.3e-112 409.5 855 35.0
SalBow7G3942 Salvia bowleyana HOM05D005824 ORTHO05D007029 1.1e-111 408.7 851 34.8
MSTRG.15631 Avicennia marina HOM05D005824 ORTHO05D007029 1.4e-111 408.3 861 35.1
Gohir.D02G178900 Gossypium hirsutum HOM05D005824 ORTHO05D007029 1.8e-111 407.9 861 35.2
Phvul.007G265900 Phaseolus vulgaris HOM05D005824 ORTHO05D007029 1.8e-111 407.9 859 36.8
CANSAT54G1845 Cannabis sativa HOM05D005824 ORTHO05D007029 5.4e-111 406.4 845 35.0
Manes.06G027100 Manihot esculenta HOM05D005824 ORTHO05D007029 5.4e-111 406.4 848 36.3
TWI38G0226 Tripterygium wilfordii HOM05D005824 ORTHO05D007029 4.5e-110 403.3 855 34.4
Atru.chr12.1601 Acer truncatum HOM05D005824 ORTHO05D007029 5.9e-110 402.9 834 36.0
PSO384G0570 Papaver somniferum HOM05D005824 ORTHO05D007029 1.0e-109 402.1 849 35.3
SGA_v2.0_scaffold33G13450 Striga asiatica HOM05D005824 ORTHO05D007029 5.0e-109 399.8 837 35.2
Sc09g0002470 Simmondsia chinensis HOM05D005824 ORTHO05D007029 8.6e-109 399.1 854 38.4
ClCG07G011770 Citrullus lanatus HOM05D005824 ORTHO05D007029 5.2e-106 389.8 847 34.9
TAR362G0448 Trochodendron aralioides HOM05D005824 ORTHO05D007029 8.9e-106 389.0 857 34.0
Prupe.6G306900 Prunus persica HOM05D005824 ORTHO05D007029 1.3e-104 385.2 905 33.4
ECA247G2466 Erigeron canadensis HOM05D005824 ORTHO05D007029 2.9e-104 384.0 834 33.8
Lj5A322T66 Lonicera japonica HOM05D005824 ORTHO05D007029 6.3e-104 382.9 808 35.6
RcHm_v2.0_Chr3g0458051 Rosa chinensis HOM05D005824 ORTHO05D007029 1.8e-103 381.3 908 33.6
Nn2g14227 Nelumbo nucifera HOM05D005824 ORTHO05D007029 4.1e-103 380.2 849 33.9
MELO3C017799.2 Cucumis melo HOM05D005824 ORTHO05D007029 5.4e-103 379.8 854 34.7
PSO017G5895 Papaver somniferum HOM05D005824 ORTHO05D007029 5.4e-103 379.8 845 33.3
vmacro01596 Vaccinium macrocarpon HOM05D005824 ORTHO05D007029 1.5e-100 371.7 831 34.4
Haze_20113 Corylus avellana HOM05D005824 ORTHO05D007029 4.3e-100 370.2 920 33.0
CsaV3_4G002430 Cucumis sativus L. HOM05D005824 ORTHO05D007029 9.5e-100 369.0 852 33.6
MD12G1202100 Malus domestica HOM05D005824 ORTHO05D007029 2.8e-99 367.5 902 33.0
FAN14G3202 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.5e-97 361.7 908 32.9
COL.COLO4_11087 Corchorus olitorius HOM05D005824 ORTHO05D007029 2.0e-97 361.3 853 32.0
FvH4_6g08180 Fragaria vesca HOM05D005824 ORTHO05D007029 3.4e-97 360.5 908 32.8
MD04G1189300 Malus domestica HOM05D005824 ORTHO05D007029 5.8e-97 359.8 903 32.2
PSO063G2449 Papaver somniferum HOM05D005824 ORTHO05D007029 2.2e-96 357.8 850 32.4
Duzib150G0567 Durio zibethinus HOM05D005824 ORTHO05D007029 3.2e-95 354.0 825 35.5
Sed0007659 Sechium edule HOM05D005824 ORTHO05D007029 5.4e-95 353.2 853 34.1
Duzib168G0004 Durio zibethinus HOM05D005824 ORTHO05D007029 3.0e-93 347.4 853 31.1
Nitab4.5_0000185g0360 Nicotiana tabacum HOM05D005824 ORTHO05D007029 2.5e-92 344.4 858 32.3
DCAR_005271 Daucus carota HOM05D005824 ORTHO05D007029 1.2e-91 342.0 858 31.5
FAN09G3961 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.6e-91 341.7 911 31.4
Ah.10g027060 Amaranthus hybridus HOM05D005824 ORTHO05D007029 8.1e-91 339.3 860 33.7
Lsat_1_v5_gn_9_78801 Lactuca sativa HOM05D005824 ORTHO05D007029 2.0e-89 334.7 806 32.9
Hma1.2p1_1243F.1_g269980 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 2.9e-88 330.9 768 33.5
Os05g0134300 Oryza sativa ssp. japonica HOM05D005824 ORTHO05D007029 6.0e-86 323.2 846 32.0
ATR0693G066 Amborella trichopoda HOM05D005824 ORTHO05D007029 3.9e-85 320.5 821 30.6
Ciclev10011677m.g Citrus clementina HOM05D005824 ORTHO05D007029 5.1e-85 320.1 330 53.6
unitig_748.g6998 Utricularia gibba HOM05D005824 ORTHO05D000260 2.5e-84 317.8 828 32.0
FAN05G5613 Fragaria x ananassa HOM05D005824 ORTHO05D007029 8.1e-83 312.8 831 31.8
HanXRQChr12g0362901 Helianthus annuus HOM05D005824 ORTHO05D007029 1.8e-82 311.6 814 31.1
Peaxi162Scf00357g00429 Petunia axillaris HOM05D005824 ORTHO05D007029 4.0e-82 310.5 797 32.1
CDE01G0540 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 2.0e-81 308.1 831 31.5
FAN02G4519 Fragaria x ananassa HOM05D005824 ORTHO05D007029 4.9e-72 276.9 892 29.8
Nitab4.5_0002783g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 6.9e-66 256.5 853 27.8
A06p36990 Brassica napus HOM05D005824 ORTHO05D007029 7.9e-62 243.0 172 73.3
BraA06t26625Z Brassica rapa HOM05D005824 ORTHO05D007029 7.9e-62 243.0 172 73.3
Zm00001eb354720 Zea mays HOM05D005824 ORTHO05D007029 1.0e-61 242.7 751 30.2
HPP92_021934 Vanilla planifolia HOM05D005824 ORTHO05D007029 6.6e-61 240.0 354 41.8
PGR083G1123 Punica granatum HOM05D005824 ORTHO05D007029 4.3e-60 237.3 699 30.6
Mapoly0075s0015 Marchantia polymorpha HOM05D005824 ORTHO05D007029 1.3e-48 199.1 841 25.0
Solyc01g101010.4 Solanum lycopersicum HOM05D005824 ORTHO05D007029 7.1e-47 193.4 242 46.7
Pp3c6_10400 Physcomitrium patens HOM05D005824 ORTHO05D007029 2.1e-46 191.8 937 25.6
Gohir.A08G201701 Gossypium hirsutum HOM05D005824 ORTHO05D007029 4.6e-46 190.7 305 39.0
Nitab4.5_0000185g0370 Nicotiana tabacum HOM05D005824 ORTHO05D007029 6.0e-46 190.3 268 39.2
SEGI_20129 Sequoiadendron giganteum HOM05D005824 ORTHO05D007029 3.9e-45 187.6 311 37.9
SGA_v2.0_scaffold438G51629 Striga asiatica HOM05D005824 ORTHO05D007029 1.0e-40 172.9 203 46.3
Actinidia35501 Actinidia chinensis HOM05D005824 ORTHO05D007029 2.5e-36 158.3 797 24.5
SMO203G0090 Selaginella moellendorffii HOM05D005824 ORTHO05D007029 1.4e-34 152.5 332 33.4
AagrBONN_evm.TU.Sc2ySwM_117.2728 Anthoceros agrestis HOM05D005824 ORTHO05D007029 1.9e-31 142.1 204 39.2
CBR_g20185 Chara braunii HOM05D005824 ORTHO05D007029 9.4e-31 139.8 289 31.5
HPP92_021933 Vanilla planifolia HOM05D005824 ORTHO05D007029 3.1e-26 124.8 173 44.5
Oeu060660.1 Olea europaea HOM05D005824 ORTHO05D007029 1.1e-20 106.3 126 46.8
Hma1.2p1_1553F.1_g290340 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 3.3e-20 104.8 417 29.7
Cfa020079 Carpinus fangiana HOM05D005824 ORTHO05D007029 3.5e-17 94.7 82 53.7
Zm00001eb056090 Zea mays HOM05D000739 ORTHO05D007029 5.9e-17 94.0 109 45.0
Zm00001eb289330 Zea mays HOM05D005824 ORTHO05D007029 3.8e-16 91.3 100 48.0
CDE12G0845 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 1.1e-15 89.7 89 50.6
Dinv30929 Davidia involucrata HOM05D005824 ORTHO05D007029 7.2e-15 87.0 113 45.1
CANSAT54G0922 Cannabis sativa HOM05D005824 ORTHO05D007029 4.7e-14 84.3 255 31.0
Nitab4.5_0000185g0350 Nicotiana tabacum HOM05D005824 ORTHO05D007029 2.9e-08 65.1 98 41.8


User provided reference genes

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