Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p21700 Brassica napus HOM05D004777 ORTHO05D006240 8.7e-75 283.5 138 100.0
A02p21620 Brassica napus HOM05D004777 ORTHO05D006240 3.3e-74 281.6 138 99.3
C09p75120 Brassica napus HOM05D004777 ORTHO05D006240 1.0e-46 190.3 145 72.4
A05p44530 Brassica napus HOM05D004777 ORTHO05D006240 2.9e-46 188.7 145 72.4
BraA05t23204Z Brassica rapa HOM05D004777 ORTHO05D006240 2.9e-46 188.7 145 72.4
Thhalv10020775m.g Eutrema salsugineum HOM05D004777 ORTHO05D006240 6.5e-46 187.6 145 71.0
BolC5t35152H Brassica oleracea HOM05D004777 ORTHO05D006240 1.1e-45 186.8 145 71.7
Sp3g00590 Schrenkiella parvula HOM05D004777 ORTHO05D006240 2.5e-45 185.7 145 70.3
Carub.0003s0061 Capsella rubella HOM05D004777 ORTHO05D006240 9.4e-45 183.7 145 69.0
AT3G01480 Arabidopsis thaliana HOM05D004777 ORTHO05D006240 1.2e-44 183.3 145 69.0
AL3G10690 Arabidopsis lyrata HOM05D004777 ORTHO05D006240 1.4e-43 179.9 145 68.3
CARHR075480 Cardamine hirsuta HOM05D004777 ORTHO05D006240 2.3e-43 179.1 145 67.6
Aa31LG5G10580 Aethionema arabicum HOM05D004777 ORTHO05D006240 4.0e-43 178.3 145 66.9
THA.LOC104802404 Tarenaya hassleriana HOM05D004777 ORTHO05D006240 5.7e-42 174.5 145 64.8
CiPaw.03G037400 Carya illinoinensis HOM05D004777 ORTHO05D006240 1.7e-41 172.9 145 62.8
PGR142G2638 Punica granatum HOM05D004777 ORTHO05D006240 2.2e-41 172.6 145 62.8
C09p47230 Brassica napus HOM05D004777 ORTHO05D006240 3.7e-41 171.8 131 71.8
Rhsim08G0055400 Rhododendron simsii HOM05D004777 ORTHO05D006240 3.7e-41 171.8 145 63.4
Cpa.g.sc186.15 Carica papaya HOM05D004777 ORTHO05D006240 4.8e-41 171.4 145 62.8
TWI56G1110 Tripterygium wilfordii HOM05D004777 ORTHO05D006240 4.8e-41 171.4 145 62.1
CSS0014422 Camellia sinensis var. sinensis HOM05D004777 ORTHO05D006240 6.3e-41 171.0 145 62.1
CSS0014615 Camellia sinensis var. sinensis HOM05D004777 ORTHO05D006240 6.3e-41 171.0 145 62.1
Atru.BG.27.p Acer truncatum HOM05D004777 ORTHO05D006240 8.3e-41 170.6 145 62.8
Actinidia16931 Actinidia chinensis HOM05D004777 ORTHO05D006240 8.3e-41 170.6 145 62.1
Ciclev10015286m.g Citrus clementina HOM05D004777 ORTHO05D006240 8.3e-41 170.6 145 62.8
Duzib187G0683 Durio zibethinus HOM05D004777 ORTHO05D006240 1.4e-40 169.9 145 61.4
vmacro18239 Vaccinium macrocarpon HOM05D004777 ORTHO05D006240 1.4e-40 169.9 145 62.8
Duzib147G0776 Durio zibethinus HOM05D004777 ORTHO05D006240 2.4e-40 169.1 145 60.7
Gohir.A09G026100 Gossypium hirsutum HOM05D004777 ORTHO05D006240 5.4e-40 167.9 145 61.4
QL02p076729 Quercus lobata HOM05D004777 ORTHO05D006240 5.4e-40 167.9 145 60.0
HanXRQChr17g0547881 Helianthus annuus HOM05D004777 ORTHO05D006240 7.0e-40 167.5 145 60.7
Dinv33499 Davidia involucrata HOM05D004777 ORTHO05D006240 9.1e-40 167.2 145 61.4
Gorai.006G029700 Gossypium raimondii HOM05D004777 ORTHO05D006240 9.1e-40 167.2 145 60.7
MD09G1035000 Malus domestica HOM05D004777 ORTHO05D006240 9.1e-40 167.2 145 62.1
Manes.15G183100 Manihot esculenta HOM05D004777 ORTHO05D006240 9.1e-40 167.2 145 61.4
Prupe.3G283500 Prunus persica HOM05D004777 ORTHO05D006240 9.1e-40 167.2 145 62.1
Glyma.13G169500 Glycine max HOM05D004777 ORTHO05D006240 1.2e-39 166.8 145 60.7
CANSAT64G2847 Cannabis sativa HOM05D004777 ORTHO05D006240 1.6e-39 166.4 145 60.0
Thecc.04G008400 Theobroma cacao HOM05D004777 ORTHO05D006240 1.6e-39 166.4 145 60.0
Gohir.A07G219400 Gossypium hirsutum HOM05D004777 ORTHO05D006240 2.0e-39 166.0 145 60.0
Lalb_Chr06g0176061 Lupinus albus HOM05D004777 ORTHO05D006240 2.0e-39 166.0 145 60.7
Lalb_Chr21g0319421 Lupinus albus HOM05D004777 ORTHO05D006240 2.0e-39 166.0 145 60.0
TAR622G1080 Trochodendron aralioides HOM05D004777 ORTHO05D006240 2.0e-39 166.0 145 60.0
MD17G1035100 Malus domestica HOM05D004777 ORTHO05D006240 2.7e-39 165.6 145 60.7
Eucgr.I01816 Eucalyptus grandis HOM05D004777 ORTHO05D006240 3.5e-39 165.2 145 60.7
Gohir.D09G025500 Gossypium hirsutum HOM05D004777 ORTHO05D006240 3.5e-39 165.2 145 60.0
Glyma.19G009700 Glycine max HOM05D004777 ORTHO05D006240 4.5e-39 164.9 145 59.3
GSVIVG01032488001 Vitis vinifera HOM05D004777 ORTHO05D006240 4.5e-39 164.9 145 60.0
ClCG10G014260 Citrullus lanatus HOM05D004777 ORTHO05D006240 5.9e-39 164.5 145 59.3
CsaV3_3G042370 Cucumis sativus L. HOM05D004777 ORTHO05D006240 5.9e-39 164.5 145 59.3
MELO3C009952.2 Cucumis melo HOM05D004777 ORTHO05D006240 7.7e-39 164.1 145 59.3
Sabra16G0231000 Salix brachista HOM05D004777 ORTHO05D006240 7.7e-39 164.1 145 59.3
VMungo0464G0641 Vigna mungo HOM05D004777 ORTHO05D006240 7.7e-39 164.1 145 59.3
Haze_14664 Corylus avellana HOM05D004777 ORTHO05D006240 1.7e-38 162.9 163 54.6
Lj7A591G73 Lonicera japonica HOM05D004777 ORTHO05D006240 2.2e-38 162.5 145 58.6
Lju41A35T60 Lonicera japonica HOM05D004777 ORTHO05D006240 2.2e-38 162.5 145 57.9
Gohir.D07G226300 Gossypium hirsutum HOM05D004777 ORTHO05D006240 2.9e-38 162.2 145 58.6
Gorai.001G261200 Gossypium raimondii HOM05D004777 ORTHO05D006240 2.9e-38 162.2 145 58.6
Phvul.004G017000 Phaseolus vulgaris HOM05D004777 ORTHO05D006240 2.9e-38 162.2 145 58.6
Sc16g0005400 Simmondsia chinensis HOM05D004777 ORTHO05D006240 2.9e-38 162.2 145 58.6
ECA246G3514 Erigeron canadensis HOM05D004777 ORTHO05D006240 3.8e-38 161.8 145 57.9
Psat1g057880 Pisum sativum HOM05D004777 ORTHO05D006240 3.8e-38 161.8 145 60.0
Potri.017G072800 Populus trichocarpa HOM05D004777 ORTHO05D006240 3.8e-38 161.8 145 58.6
PGSC0003DMG401000527 Solanum tuberosum HOM05D004777 ORTHO05D006240 3.8e-38 161.8 145 58.6
TAR374G0088 Trochodendron aralioides HOM05D004777 ORTHO05D006240 3.8e-38 161.8 145 57.2
Migut.H00126 Erythranthe guttata HOM05D004777 ORTHO05D006240 5.0e-38 161.4 145 59.3
Lj2g0000040 Lotus japonicus HOM05D004777 ORTHO05D006240 5.0e-38 161.4 145 57.9
Medtr6g007607 Medicago truncatula HOM05D004777 ORTHO05D006240 5.0e-38 161.4 145 58.6
PSO478G4796 Papaver somniferum HOM05D004777 ORTHO05D006240 5.0e-38 161.4 145 58.6
Potri.001G351400 Populus trichocarpa HOM05D004777 ORTHO05D006240 5.0e-38 161.4 145 57.9
Oeu043064.1 Olea europaea HOM05D004777 ORTHO05D006240 6.5e-38 161.0 145 59.3
Solyc02g086910.4 Solanum lycopersicum HOM05D004777 ORTHO05D006240 6.5e-38 161.0 145 57.9
COL.COLO4_28942 Corchorus olitorius HOM05D004777 ORTHO05D006240 8.5e-38 160.6 173 52.0
FAN05G4199 Fragaria x ananassa HOM05D004777 ORTHO05D006240 8.5e-38 160.6 145 58.6
FAN09G3008 Fragaria x ananassa HOM05D004777 ORTHO05D006240 8.5e-38 160.6 145 58.6
DCAR_011208 Daucus carota HOM05D004777 ORTHO05D006240 1.5e-37 159.8 145 58.6
Nitab4.5_0003337g0100 Nicotiana tabacum HOM05D004777 ORTHO05D006240 1.5e-37 159.8 145 57.9
PSO017G2091 Papaver somniferum HOM05D004777 ORTHO05D006240 1.9e-37 159.5 145 57.9
Sopen02g031680 Solanum pennellii HOM05D004777 ORTHO05D006240 1.9e-37 159.5 145 56.6
Cc07_g02330 Coffea canephora HOM05D004777 ORTHO05D006240 2.5e-37 159.1 145 57.2
Nitab4.5_0005176g0090 Nicotiana tabacum HOM05D004777 ORTHO05D006240 2.5e-37 159.1 145 57.2
Ah.04g163480 Amaranthus hybridus HOM05D004777 ORTHO05D006240 3.2e-37 158.7 145 57.9
Sabra17G0060200 Salix brachista HOM05D004777 ORTHO05D006240 3.2e-37 158.7 145 57.2
AUR62043215 Chenopodium quinoa HOM05D004777 ORTHO05D006240 4.2e-37 158.3 145 57.9
Hma1.2p1_0802F.1_g220410 Hydrangea macrophylla HOM05D004777 ORTHO05D006240 5.5e-37 157.9 145 58.6
SGA_v2.0_scaffold135G34858 Striga asiatica HOM05D004777 ORTHO05D006240 5.5e-37 157.9 145 58.6
FvH4_6g50590 Fragaria vesca HOM05D004777 ORTHO05D006240 7.2e-37 157.5 145 57.9
FAN14G1693 Fragaria x ananassa HOM05D004777 ORTHO05D006240 7.2e-37 157.5 145 57.9
FAN14G5049 Fragaria x ananassa HOM05D004777 ORTHO05D006240 7.2e-37 157.5 145 57.9
Peaxi162Scf00129g01038 Petunia axillaris HOM05D004777 ORTHO05D006240 7.2e-37 157.5 145 58.6
Ca_04203_v3 Cicer arietinum L. HOM05D004777 ORTHO05D006240 9.4e-37 157.1 163 52.8
MBI10_g11072_MAGBIO Magnolia biondii HOM05D004777 ORTHO05D006240 9.4e-37 157.1 154 56.5
SalBow1G4936 Salvia bowleyana HOM05D004777 ORTHO05D006240 9.4e-37 157.1 147 58.5
Aqoxy3G01003 Aquilegia oxysepala HOM05D004777 ORTHO05D006240 1.2e-36 156.8 145 56.6
MSTRG.3173 Avicennia marina HOM05D004777 ORTHO05D006240 1.6e-36 156.4 145 57.2
ATR0730G054 Amborella trichopoda HOM05D004777 ORTHO05D006240 2.1e-36 156.0 145 57.9
TPR.G2322 Trifolium pratense HOM05D004777 ORTHO05D006240 2.1e-36 156.0 145 57.2
A02p21560 Brassica napus HOM05D004777 ORTHO05D006240 2.7e-36 155.6 81 93.8
Hund02275 Selenicereus undatus HOM05D004777 ORTHO05D006240 2.7e-36 155.6 145 55.9
AUR62035505 Chenopodium quinoa HOM05D004777 ORTHO05D006240 4.7e-36 154.8 145 56.6
CDE02G3984 Ceratophyllum demersum HOM05D004777 ORTHO05D006240 6.1e-36 154.5 145 56.6
unitig_21.g20495 Utricularia gibba HOM05D004777 ORTHO05D006240 6.1e-36 154.5 151 55.0
Sed0004879 Sechium edule HOM05D004777 ORTHO05D006240 8.0e-36 154.1 145 55.2
Zm00001eb042520 Zea mays HOM05D004777 ORTHO05D006240 1.8e-35 152.9 145 56.6
Os08g0382400 Oryza sativa ssp. japonica HOM05D004777 ORTHO05D006240 5.2e-35 151.4 145 55.9
EL10Ac4g08570 Beta vulgaris HOM05D004777 ORTHO05D006240 1.5e-34 149.8 145 54.5
SEGI_33645 Sequoiadendron giganteum HOM05D004777 ORTHO05D006240 2.0e-34 149.4 145 56.6
FAN14G3936 Fragaria x ananassa HOM05D004777 ORTHO05D006240 1.8e-32 142.9 142 54.2
Nn4g22807 Nelumbo nucifera HOM05D004777 ORTHO05D006240 2.4e-32 142.5 145 53.8
CBR_g37206 Chara braunii HOM05D004777 ORTHO05D006240 2.9e-30 135.6 146 51.4
BolC9t57578H Brassica oleracea HOM05D004777 ORTHO05D006240 8.6e-30 134.0 66 92.4
Lsat_1_v5_gn_0_26221 Lactuca sativa HOM05D004777 ORTHO05D006240 3.3e-29 132.1 129 55.0
Pp3c15_550 Physcomitrium patens HOM05D004777 ORTHO05D006240 8.9e-27 124.0 145 48.3
AagrBONN_evm.TU.Sc2ySwM_368.1753 Anthoceros agrestis HOM05D004777 ORTHO05D006240 1.5e-26 123.2 145 46.2
BcaB08g36813 Brassica carinata HOM05D004777 ORTHO05D006240 1.5e-26 123.2 83 80.7
SMO146G0026 Selaginella moellendorffii HOM05D004777 ORTHO05D006240 3.4e-26 122.1 145 49.7
Pp3c9_660 Physcomitrium patens HOM05D004777 ORTHO05D006240 3.7e-25 118.6 145 46.9
arahy.Tifrunner.gnm1.ann1.8Y3CFZ Arachis hypogaea HOM05D004777 ORTHO05D006240 5.4e-24 114.8 96 59.4
arahy.Tifrunner.gnm1.ann1.8ZV6UW Arachis hypogaea HOM05D004777 ORTHO05D006240 5.4e-24 114.8 96 59.4
HPP92_019963 Vanilla planifolia HOM05D004777 ORTHO05D006240 5.4e-24 114.8 107 59.8
Mapoly0001s0360 Marchantia polymorpha HOM05D004777 ORTHO05D006240 4.6e-23 111.7 145 44.1
BcaC04g20152 Brassica carinata HOM05D004777 ORTHO05D006240 5.0e-22 108.2 81 67.9
Pp3c26_630 Physcomitrium patens HOM05D004777 ORTHO05D006240 4.3e-21 105.1 145 41.4
BolC2t09566H Brassica oleracea HOM05D004777 ORTHO05D022002 9.5e-21 104.0 112 55.4
BolC6t35260H Brassica oleracea HOM05D004777 ORTHO05D022002 5.8e-18 94.7 98 58.2
CAN.G206.34 Capsicum annuum HOM05D004777 ORTHO05D006240 2.2e-17 92.8 74 64.9
Cre03.g189800 Chlamydomonas reinhardtii HOM05D004777 ORTHO05D006240 6.4e-17 91.3 145 40.7
BcaC09g47657 Brassica carinata HOM05D004777 ORTHO05D006240 8.3e-17 90.9 74 63.5
RcHm_v2.0_Chr2g0171381 Rosa chinensis HOM05D004777 ORTHO05D006240 1.4e-16 90.1 74 63.5
MCO01G434 Micromonas commoda HOM05D004777 ORTHO05D006240 2.0e-15 86.3 130 39.2
RcHm_v2.0_Chr2g0171361 Rosa chinensis HOM05D004777 ORTHO05D006240 2.8e-12 75.9 62 58.1
BcaC01g04837 Brassica carinata HOM05D004777 ORTHO05D006240 4.7e-12 75.1 58 62.1
RcHm_v2.0_Chr2g0171371 Rosa chinensis HOM05D004777 ORTHO05D006240 6.2e-12 74.7 62 58.1
CDE06G2275 Ceratophyllum demersum HOM05D004777 ORTHO05D006240 3.4e-10 68.9 63 50.8
HPP92_019953 Vanilla planifolia HOM05D004777 ORTHO05D006240 4.4e-10 68.6 59 62.7
RcHm_v2.0_Chr2g0171291 Rosa chinensis HOM05D004777 ORTHO05D006240 1.3e-09 67.0 89 46.1
HPP92_019954 Vanilla planifolia HOM05D004777 ORTHO05D006240 1.3e-09 67.0 62 51.6
A09p42090 Brassica napus HOM05D004777 ORTHO05D006240 1.4e-08 63.5 70 50.0
BolC3t20605H Brassica oleracea HOM05D004777 ORTHO05D022002 2.4e-08 62.8 89 46.1
MBI02_g21155_MAGBIO Magnolia biondii HOM05D004777 ORTHO05D006240 2.7e-07 59.3 47 57.4
PRCOL_00001222 Prasinoderma coloniale HOM05D004777 ORTHO05D006240 1.7e-06 56.6 180 25.0


User provided reference genes

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