Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p04770 Brassica napus HOM05D004151 ORTHO05D004775 8.8e-81 303.9 195 100.0
BraA02t05436Z Brassica rapa HOM05D004151 ORTHO05D004775 6.5e-76 287.7 196 93.9
BcaC03g13582 Brassica carinata HOM05D004151 ORTHO05D004775 2.4e-70 269.2 192 90.6
BolC2t06882H Brassica oleracea HOM05D004151 ORTHO05D004775 2.4e-70 269.2 192 90.6
C02p09730 Brassica napus HOM05D004151 ORTHO05D004775 7.0e-70 267.7 192 90.6
Sp6g26140 Schrenkiella parvula HOM05D004151 ORTHO05D004775 3.0e-60 235.7 158 86.7
BolC3t13499H Brassica oleracea HOM05D004151 ORTHO05D004775 6.6e-60 234.6 168 83.9
BcaB01g05179 Brassica carinata HOM05D004151 ORTHO05D004775 5.6e-59 231.5 168 83.3
A03p08690 Brassica napus HOM05D004151 ORTHO05D004775 5.6e-59 231.5 169 79.9
C03p10140 Brassica napus HOM05D004151 ORTHO05D004775 5.6e-59 231.5 168 83.3
BraA03t10192Z Brassica rapa HOM05D004151 ORTHO05D004775 5.6e-59 231.5 168 83.3
BcaB05g23300 Brassica carinata HOM05D004151 ORTHO05D004775 2.1e-58 229.6 163 82.2
A01p41270 Brassica napus HOM05D004151 ORTHO05D004775 5.8e-56 221.5 165 81.2
BNapus_Darmor_BZH_scaffold_78p00440 Brassica napus HOM05D004151 ORTHO05D004775 5.8e-56 221.5 165 81.2
Thhalv10014755m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 5.8e-56 221.5 148 79.1
BraA01t04550Z Brassica rapa HOM05D004151 ORTHO05D004775 4.9e-55 218.4 165 80.0
AT3G03920 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 4.1e-54 215.3 166 79.5
BolC1t05799H Brassica oleracea HOM05D004151 ORTHO05D004775 4.1e-54 215.3 169 75.1
CARHR078040 Cardamine hirsuta HOM05D004151 ORTHO05D004775 4.6e-53 211.8 165 73.3
CARHR194880 Cardamine hirsuta HOM05D004151 ORTHO05D004775 6.0e-53 211.5 165 75.8
BcaNung05745 Brassica carinata HOM05D004151 ORTHO05D004775 1.7e-52 209.9 164 75.6
BcaNung05743 Brassica carinata HOM05D004151 ORTHO05D004775 3.9e-52 208.8 166 77.1
AT5G18180 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 1.9e-51 206.5 148 77.7
Ah.06g191800 Amaranthus hybridus HOM05D004151 ORTHO05D004775 4.3e-51 205.3 159 74.8
AL3G13810 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 5.6e-51 204.9 156 78.8
Carub.0003s0316 Capsella rubella HOM05D004151 ORTHO05D004775 3.6e-50 202.2 166 74.7
AL6G29380 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 4.7e-50 201.8 148 76.4
MD00G1189600 Malus domestica HOM05D004151 ORTHO05D004775 4.7e-50 201.8 153 72.5
Aa31LG11G11430 Aethionema arabicum HOM05D004151 ORTHO05D004775 6.2e-50 201.4 149 79.2
FvH4_1g30320 Fragaria vesca HOM05D004151 ORTHO05D004775 1.4e-49 200.3 153 77.8
SGA_v2.0_scaffold274G46513 Striga asiatica HOM05D004151 ORTHO05D004775 1.4e-49 200.3 158 76.6
Glyma.16G041400 Glycine max HOM05D004151 ORTHO05D004775 1.8e-49 199.9 168 75.6
Sp3g02890 Schrenkiella parvula HOM05D004151 ORTHO05D004775 3.1e-49 199.1 160 75.0
MD05G1045500 Malus domestica HOM05D004151 ORTHO05D004775 6.8e-49 198.0 153 73.2
Manes.08G144000 Manihot esculenta HOM05D004151 ORTHO05D004775 6.8e-49 198.0 143 80.4
THA.LOC104827273 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 6.8e-49 198.0 147 79.6
TWI32G1207 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 6.8e-49 198.0 153 77.8
FAN28G2413 Fragaria x ananassa HOM05D004151 ORTHO05D004775 8.9e-49 197.6 145 78.6
Peaxi162Scf00003g04832 Petunia axillaris HOM05D004151 ORTHO05D004775 8.9e-49 197.6 159 67.9
FAN19G1796 Fragaria x ananassa HOM05D004151 ORTHO05D004775 1.5e-48 196.8 153 77.1
FAN23G0170 Fragaria x ananassa HOM05D004151 ORTHO05D004775 1.5e-48 196.8 153 77.1
FAN26G2823 Fragaria x ananassa HOM05D004151 ORTHO05D004775 1.5e-48 196.8 153 77.1
Thhalv10021561m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 2.0e-48 196.4 151 75.5
Sed0023399 Sechium edule HOM05D004151 ORTHO05D004775 2.0e-48 196.4 151 78.8
Os11g0579800 Oryza sativa ssp. japonica HOM05D004151 ORTHO05D004775 2.6e-48 196.1 159 70.4
Ah.13g075350 Amaranthus hybridus HOM05D004151 ORTHO05D004775 5.8e-48 194.9 151 76.2
CsaV3_4G013280 Cucumis sativus L. HOM05D004151 ORTHO05D004775 5.8e-48 194.9 166 74.1
CANSAT78G0749 Cannabis sativa HOM05D004151 ORTHO05D004775 9.9e-48 194.1 179 70.9
Carub.0006s1646 Capsella rubella HOM05D004151 ORTHO05D004775 9.9e-48 194.1 148 78.4
Nn7g35851 Nelumbo nucifera HOM05D004151 ORTHO05D004775 9.9e-48 194.1 146 77.4
Duzib106G1401 Durio zibethinus HOM05D004151 ORTHO05D004775 1.3e-47 193.7 146 79.5
RcHm_v2.0_Chr3g0490211 Rosa chinensis HOM05D004151 ORTHO05D004775 1.3e-47 193.7 153 75.8
PSO063G0165 Papaver somniferum HOM05D004151 ORTHO05D004775 1.7e-47 193.4 160 73.8
Sed0025621 Sechium edule HOM05D004151 ORTHO05D004775 1.7e-47 193.4 171 71.3
Psat0s1971g0280 Pisum sativum HOM05D004151 ORTHO05D004775 2.9e-47 192.6 151 75.5
Sc25g0004980 Simmondsia chinensis HOM05D004151 ORTHO05D004775 3.7e-47 192.2 149 70.5
PGR142G1491 Punica granatum HOM05D004151 ORTHO05D004775 4.9e-47 191.8 145 78.6
Thecc.05G294500 Theobroma cacao HOM05D004151 ORTHO05D004775 4.9e-47 191.8 146 79.5
PSO782G4796 Papaver somniferum HOM05D004151 ORTHO05D004775 6.4e-47 191.4 159 70.4
PGSC0003DMG400008366 Solanum tuberosum HOM05D004151 ORTHO05D004775 6.4e-47 191.4 148 72.3
Oeu059999.1 Olea europaea HOM05D004151 ORTHO05D004775 8.3e-47 191.0 169 69.2
Atru.chr5.2062 Acer truncatum HOM05D004151 ORTHO05D004775 1.1e-46 190.7 153 73.2
MELO3C008801.2 Cucumis melo HOM05D004151 ORTHO05D004775 1.1e-46 190.7 166 75.3
TAR369G0512 Trochodendron aralioides HOM05D004151 ORTHO05D004775 1.1e-46 190.7 156 75.0
Manes.09G141400 Manihot esculenta HOM05D004151 ORTHO05D004775 1.4e-46 190.3 151 76.8
Aa31LG5G14500 Aethionema arabicum HOM05D004151 ORTHO05D004775 1.9e-46 189.9 169 73.4
TWI34G0161 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 1.9e-46 189.9 162 72.2
Migut.J01888 Erythranthe guttata HOM05D004151 ORTHO05D004775 2.4e-46 189.5 149 75.8
Nitab4.5_0007542g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 2.4e-46 189.5 148 68.9
Sabra13G0051900 Salix brachista HOM05D004151 ORTHO05D004775 2.4e-46 189.5 165 69.7
Aqoxy1G00486 Aquilegia oxysepala HOM05D004151 ORTHO05D004775 3.2e-46 189.1 149 75.8
Medtr7g085640 Medicago truncatula HOM05D004151 ORTHO05D004775 3.2e-46 189.1 108 81.5
Solyc10g078540.3 Solanum lycopersicum HOM05D004151 ORTHO05D004775 4.1e-46 188.7 148 70.9
Sopen10g029190 Solanum pennellii HOM05D004151 ORTHO05D004775 4.1e-46 188.7 148 70.9
Cfa016441 Carpinus fangiana HOM05D004151 ORTHO05D004775 5.4e-46 188.3 161 68.9
Haze_19418 Corylus avellana HOM05D004151 ORTHO05D004775 5.4e-46 188.3 161 68.9
Haze_19447 Corylus avellana HOM05D004151 ORTHO05D004775 5.4e-46 188.3 161 68.9
TPR.G5895 Trifolium pratense HOM05D004151 ORTHO05D004775 5.4e-46 188.3 149 75.2
ClCG04G005310 Citrullus lanatus HOM05D004151 ORTHO05D004775 7.1e-46 188.0 150 76.7
Nitab4.5_0009048g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 7.1e-46 188.0 148 69.6
ECA233G5487 Erigeron canadensis HOM05D004151 ORTHO05D004775 1.2e-45 187.2 166 67.5
Atru.chr5.2060 Acer truncatum HOM05D004151 ORTHO05D004775 1.6e-45 186.8 153 72.5
Gohir.A08G213200 Gossypium hirsutum HOM05D004151 ORTHO05D004775 1.6e-45 186.8 143 79.0
Gorai.004G244500 Gossypium raimondii HOM05D004151 ORTHO05D004775 1.6e-45 186.8 143 79.0
Dinv37014 Davidia involucrata HOM05D004151 ORTHO05D004775 2.1e-45 186.4 172 65.1
GSVIVG01033401001 Vitis vinifera HOM05D004151 ORTHO05D004775 2.1e-45 186.4 174 67.2
Cc06_g22960 Coffea canephora HOM05D004151 ORTHO05D004775 2.7e-45 186.0 149 70.5
THA.LOC104802867 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 2.7e-45 186.0 148 75.7
Hma1.2p1_0134F.1_g061640 Hydrangea macrophylla HOM05D004151 ORTHO05D004775 3.5e-45 185.7 142 76.8
PSO339G5713 Papaver somniferum HOM05D004151 ORTHO05D004775 3.5e-45 185.7 143 76.2
SalBow5G4201 Salvia bowleyana HOM05D004151 ORTHO05D004775 3.5e-45 185.7 140 73.6
EL10Ac3g06820 Beta vulgaris HOM05D004151 ORTHO05D004775 4.6e-45 185.3 146 74.7
Gohir.A11G296500 Gossypium hirsutum HOM05D004151 ORTHO05D004775 4.6e-45 185.3 143 78.3
Gohir.D11G310400 Gossypium hirsutum HOM05D004151 ORTHO05D004775 4.6e-45 185.3 143 78.3
Gorai.007G343400 Gossypium raimondii HOM05D004151 ORTHO05D004775 4.6e-45 185.3 143 78.3
Lj1g0021266 Lotus japonicus HOM05D004151 ORTHO05D004775 4.6e-45 185.3 174 69.0
SEGI_32651 Sequoiadendron giganteum HOM05D004151 ORTHO05D004775 4.6e-45 185.3 149 70.5
Gohir.D08G230300 Gossypium hirsutum HOM05D004151 ORTHO05D004775 6.0e-45 184.9 143 78.3
Lsat_1_v5_gn_8_24760 Lactuca sativa HOM05D004151 ORTHO05D004775 6.0e-45 184.9 154 74.7
Lalb_Chr14g0364491 Lupinus albus HOM05D004151 ORTHO05D004775 6.0e-45 184.9 157 66.9
PSO384G0229 Papaver somniferum HOM05D004151 ORTHO05D004775 6.0e-45 184.9 149 74.5
QL07p019530 Quercus lobata HOM05D004151 ORTHO05D004775 6.0e-45 184.9 152 73.7
unitig_21.g20195 Utricularia gibba HOM05D004151 ORTHO05D004775 6.0e-45 184.9 168 62.5
arahy.Tifrunner.gnm1.ann1.JDMG7B Arachis hypogaea HOM05D004151 ORTHO05D004775 1.0e-44 184.1 168 73.2
arahy.Tifrunner.gnm1.ann1.PLSY77 Arachis hypogaea HOM05D004151 ORTHO05D004775 1.0e-44 184.1 168 73.2
MSTRG.19934 Avicennia marina HOM05D004151 ORTHO05D004775 1.0e-44 184.1 161 72.0
CiPaw.09G001900 Carya illinoinensis HOM05D004151 ORTHO05D004775 1.0e-44 184.1 151 72.8
Phvul.001G110400 Phaseolus vulgaris HOM05D004151 ORTHO05D004775 1.0e-44 184.1 155 74.2
VMungo1383G2477 Vigna mungo HOM05D004151 ORTHO05D004775 1.0e-44 184.1 148 75.0
Hund24835 Selenicereus undatus HOM05D004151 ORTHO05D004775 1.3e-44 183.7 149 73.2
Dinv14579 Davidia involucrata HOM05D004151 ORTHO05D004775 2.3e-44 183.0 176 68.2
Lalb_Chr22g0359191 Lupinus albus HOM05D004151 ORTHO05D004775 2.3e-44 183.0 165 64.2
AUR62032690 Chenopodium quinoa HOM05D004151 ORTHO05D004775 3.0e-44 182.6 145 74.5
Prupe.8G064800 Prunus persica HOM05D004151 ORTHO05D004775 3.0e-44 182.6 143 76.2
HPP92_021240 Vanilla planifolia HOM05D004151 ORTHO05D004775 3.9e-44 182.2 150 74.0
CDE06G0359 Ceratophyllum demersum HOM05D004151 ORTHO05D004775 5.1e-44 181.8 149 72.5
Glyma.19G110900 Glycine max HOM05D004151 ORTHO05D004775 5.1e-44 181.8 184 67.4
COL.COLO4_13597 Corchorus olitorius HOM05D004151 ORTHO05D004775 6.6e-44 181.4 142 76.8
Zm00001eb200450 Zea mays HOM05D004151 ORTHO05D004775 6.6e-44 181.4 148 73.6
Potri.013G058400 Populus trichocarpa HOM05D004151 ORTHO05D004775 8.6e-44 181.0 161 67.7
HanXRQChr08g0216931 Helianthus annuus HOM05D004151 ORTHO05D004775 1.1e-43 180.6 186 65.1
Lsat_1_v5_gn_8_145841 Lactuca sativa HOM05D004151 ORTHO05D004775 2.5e-43 179.5 154 73.4
Oeu049600.1 Olea europaea HOM05D004151 ORTHO05D004775 3.3e-43 179.1 148 72.3
Duzib177G0709 Durio zibethinus HOM05D004151 ORTHO05D004775 4.3e-43 178.7 148 75.0
HanXRQChr07g0204461 Helianthus annuus HOM05D004151 ORTHO05D004775 1.2e-42 177.2 148 74.3
ATR0697G007 Amborella trichopoda HOM05D004151 ORTHO05D004775 1.1e-41 174.1 140 75.0
Potri.019G034900 Populus trichocarpa HOM05D004151 ORTHO05D004775 1.8e-41 173.3 158 70.9
Sabra19G0042500 Salix brachista HOM05D004151 ORTHO05D004775 2.4e-41 172.9 143 76.2
Sabra19G0044800 Salix brachista HOM05D004151 ORTHO05D004775 2.4e-41 172.9 143 76.2
CSS0045523 Camellia sinensis var. sinensis HOM05D004151 ORTHO05D004775 3.1e-41 172.6 153 70.6
CBR_g48747 Chara braunii HOM05D004151 ORTHO05D004775 3.1e-41 172.6 109 75.2
vmacro09141 Vaccinium macrocarpon HOM05D004151 ORTHO05D004775 1.2e-40 170.6 164 64.0
Zm00001eb114360 Zea mays HOM05D004151 ORTHO05D004775 2.0e-40 169.9 182 61.0
Actinidia22083 Actinidia chinensis HOM05D004151 ORTHO05D004775 4.4e-40 168.7 144 73.6
Mapoly0086s0024 Marchantia polymorpha HOM05D004151 ORTHO05D004775 4.4e-40 168.7 108 72.2
Pp3c5_28430 Physcomitrium patens HOM05D004151 ORTHO05D004775 7.6e-40 167.9 159 65.4
Peaxi162Scf00076g01048 Petunia axillaris HOM05D004151 ORTHO05D004775 1.7e-39 166.8 151 66.2
Pp3c25_15020 Physcomitrium patens HOM05D004151 ORTHO05D004775 1.7e-39 166.8 159 65.4
AagrBONN_evm.TU.Sc2ySwM_362.2901 Anthoceros agrestis HOM05D004151 ORTHO05D004775 2.9e-39 166.0 149 63.1
Cpa.g.sc51.114 Carica papaya HOM05D004151 ORTHO05D004775 8.4e-39 164.5 95 81.1
Cre13.g567850 Chlamydomonas reinhardtii HOM05D004151 ORTHO05D004775 1.4e-38 163.7 167 63.5
CAN.G960.49 Capsicum annuum HOM05D004151 ORTHO05D004775 3.2e-38 162.5 92 82.6
Rhsim04G0087500 Rhododendron simsii HOM05D004151 ORTHO05D004775 4.1e-38 162.2 150 65.3
COL.COLO4_13598 Corchorus olitorius HOM05D004151 ORTHO05D004775 9.2e-38 161.0 148 68.9
Nitab4.5_0004844g0050 Nicotiana tabacum HOM05D004151 ORTHO05D004775 3.5e-37 159.1 89 83.1
Hund19236 Selenicereus undatus HOM05D004151 ORTHO05D004775 7.8e-37 157.9 110 70.9
Ca_08267_v3 Cicer arietinum L. HOM05D004151 ORTHO05D004775 3.0e-36 156.0 90 82.2
Nitab4.5_0002769g0090 Nicotiana tabacum HOM05D004151 ORTHO05D004775 7.3e-35 151.4 159 61.0
MBI11_g31283_MAGBIO Magnolia biondii HOM05D004151 ORTHO05D004775 9.0e-33 144.4 115 73.0
C09p58800 Brassica napus HOM05D004151 ORTHO05D004775 1.2e-32 144.1 77 84.4
MCO13G219 Micromonas commoda HOM05D004151 ORTHO05D004775 2.6e-32 142.9 132 63.6
BolC2t11912H Brassica oleracea HOM05D004151 ORTHO05D004775 9.9e-32 141.0 128 60.2
SMO347G0554 Selaginella moellendorffii HOM05D004151 ORTHO05D004775 9.3e-30 134.4 150 60.7
BraA10t42874Z Brassica rapa HOM05D004151 ORTHO05D004775 3.3e-27 125.9 120 58.3
PRCOL_00005119 Prasinoderma coloniale HOM05D005848 ORTHO05D007532 5.3e-25 118.6 76 67.1
C02p58510 Brassica napus HOM05D004151 ORTHO05D004775 9.0e-25 117.9 94 62.8
unitig_744.g24550 Utricularia gibba HOM05D004151 ORTHO05D004775 2.9e-23 112.8 64 82.8
Actinidia30553 Actinidia chinensis HOM05D004151 ORTHO05D004775 6.0e-21 105.1 58 84.5
Haze_27090 Corylus avellana HOM05D000590 ORTHO05D004775 1.6e-18 97.1 114 43.0
HanXRQChr05g0143841 Helianthus annuus HOM05D004151 ORTHO05D004775 1.8e-17 93.6 144 46.5
Oeu035720.1 Olea europaea HOM05D004151 ORTHO05D004775 2.4e-17 93.2 104 53.8
BolC9t58722H Brassica oleracea HOM05D004151 ORTHO05D004775 3.1e-17 92.8 148 50.7
Oeu035726.1 Olea europaea HOM05D004151 ORTHO05D004775 1.5e-16 90.5 104 52.9
Zm00001eb274230 Zea mays HOM05D004151 ORTHO05D004775 9.9e-16 87.8 50 76.0
BcaB08g36698 Brassica carinata HOM05D004151 ORTHO05D004775 1.3e-12 77.4 147 38.8
Atru.chr6.7 Acer truncatum HOM05D004151 ORTHO05D004775 3.4e-08 62.8 75 53.3
Atru.chr10.1764 Acer truncatum HOM05D004151 ORTHO05D004775 3.8e-07 59.3 82 50.0
Atru.chr5.2304 Acer truncatum HOM05D004151 ORTHO05D004775 3.8e-07 59.3 82 50.0
Atru.chr13.534 Acer truncatum HOM05D004151 ORTHO05D004775 3.2e-06 56.2 82 48.8
Atru.chr2.3197 Acer truncatum HOM05D004151 ORTHO05D004775 3.2e-06 56.2 82 48.8
Atru.chr4.2011 Acer truncatum HOM05D004151 ORTHO05D004775 3.2e-06 56.2 82 48.8
ECA246G0128 Erigeron canadensis HOM05D001659 ORTHO05D001659 4.2e-06 55.8 38 60.5


User provided reference genes

Program Settings