Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p39550 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1841.6 919 100.0
C01p50480 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1731.8 1085 82.6
BolC1t05000H Brassica oleracea HOM05D001849 ORTHO05D004689 0.0e+00 1697.9 1089 81.5
Thhalv10019957m.g Eutrema salsugineum HOM05D001849 ORTHO05D004689 0.0e+00 1642.9 1077 79.1
C05p53520 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1627.8 1078 78.6
A05p35330 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1623.6 1078 78.6
BolC5t34029H Brassica oleracea HOM05D001849 ORTHO05D004689 0.0e+00 1620.5 1078 78.3
BcaC05g29121 Brassica carinata HOM05D001849 ORTHO05D004689 0.0e+00 1604.0 1078 77.8
Sp3g12380 Schrenkiella parvula HOM05D001849 ORTHO05D004689 0.0e+00 1604.0 1078 77.6
Carub.0003s1373 Capsella rubella HOM05D001849 ORTHO05D004689 0.0e+00 1603.6 1080 76.8
BraA05t22343Z Brassica rapa HOM05D001849 ORTHO05D004689 0.0e+00 1601.6 1116 75.6
AT3G14120 Arabidopsis thaliana HOM05D001849 ORTHO05D004689 0.0e+00 1595.9 1078 76.7
AL3G26350 Arabidopsis lyrata HOM05D001849 ORTHO05D004689 0.0e+00 1538.5 1041 77.3
Aa31LG8G1350 Aethionema arabicum HOM05D001849 ORTHO05D004689 0.0e+00 1514.6 1078 73.3
THA.LOC104822664 Tarenaya hassleriana HOM05D001849 ORTHO05D004689 0.0e+00 1491.1 1083 71.7
Manes.11G016400 Manihot esculenta HOM05D001849 ORTHO05D004689 0.0e+00 1298.5 1089 62.5
Duzib192G0006 Durio zibethinus HOM05D001849 ORTHO05D004689 0.0e+00 1268.1 1087 61.2
Potri.001G165900 Populus trichocarpa HOM05D001849 ORTHO05D004689 0.0e+00 1261.1 1091 61.2
CiPaw.01G216000 Carya illinoinensis HOM05D001849 ORTHO05D004689 0.0e+00 1260.7 1086 61.4
Duzib235G0671 Durio zibethinus HOM05D001849 ORTHO05D004689 0.0e+00 1260.7 1084 61.3
TWI59G1440 Tripterygium wilfordii HOM05D001849 ORTHO05D004689 0.0e+00 1256.5 1085 59.8
Gohir.A09G079900 Gossypium hirsutum HOM05D001849 ORTHO05D004689 0.0e+00 1256.1 1088 60.2
COL.COLO4_30797 Corchorus olitorius HOM05D001849 ORTHO05D004689 0.0e+00 1253.4 1091 60.8
QL05p003662 Quercus lobata HOM05D001849 ORTHO05D004689 0.0e+00 1249.6 1102 60.7
Sabra01G0127400 Salix brachista HOM05D001849 ORTHO05D004689 0.0e+00 1246.9 1097 60.2
Cfa003503 Carpinus fangiana HOM05D001849 ORTHO05D004689 0.0e+00 1245.7 1099 61.4
Ciclev10027090m.g Citrus clementina HOM05D001849 ORTHO05D004689 0.0e+00 1238.0 1089 60.9
Gohir.D09G079550 Gossypium hirsutum HOM05D001849 ORTHO05D004689 0.0e+00 1233.4 1114 58.7
Gorai.006G094800 Gossypium raimondii HOM05D001849 ORTHO05D004689 0.0e+00 1229.9 1111 58.9
Prupe.3G037400 Prunus persica HOM05D001849 ORTHO05D004689 0.0e+00 1224.2 1089 60.7
MD09G1178100 Malus domestica HOM05D001849 ORTHO05D004689 0.0e+00 1207.6 1087 60.0
Thecc.06G124800 Theobroma cacao HOM05D001849 ORTHO05D004689 0.0e+00 1198.7 980 63.1
vmacro15054 Vaccinium macrocarpon HOM05D001849 ORTHO05D004689 0.0e+00 1188.7 1090 58.5
FvH4_6g35170 Fragaria vesca HOM05D001849 ORTHO05D004689 0.0e+00 1183.7 1081 59.9
MD17G1148600 Malus domestica HOM05D001849 ORTHO05D004689 0.0e+00 1183.3 1093 58.6
RcHm_v2.0_Chr2g0146431 Rosa chinensis HOM05D001849 ORTHO05D004689 0.0e+00 1183.3 1082 60.1
PGR119G1999 Punica granatum HOM05D001849 ORTHO05D004689 0.0e+00 1178.7 1096 57.8
CSS0036951 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1174.1 1088 59.3
FAN05G2930 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1171.0 1077 59.7
Sopen12g023890 Solanum pennellii HOM05D001849 ORTHO05D004689 0.0e+00 1164.4 1084 57.3
MBI13_g01700_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 0.0e+00 1161.4 1091 57.1
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 0.0e+00 1154.8 1053 59.3
FAN02G0489 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1147.5 1134 56.7
Glyma.07G042000 Glycine max HOM05D001849 ORTHO05D004689 0.0e+00 1144.8 1095 57.4
Lj3g0004011 Lotus japonicus HOM05D001849 ORTHO05D004689 0.0e+00 1143.6 1133 55.4
VMungo0331G1611 Vigna mungo HOM05D001849 ORTHO05D004689 0.0e+00 1139.8 1100 57.0
FAN14G1459 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1136.7 1095 58.0
Sed0016273 Sechium edule HOM05D001849 ORTHO05D004689 0.0e+00 1132.5 1084 55.8
Medtr8g022010 Medicago truncatula HOM05D001849 ORTHO05D004689 0.0e+00 1129.0 1086 55.9
EL10Ac7g16444 Beta vulgaris HOM05D001849 ORTHO05D004689 0.0e+00 1125.9 1118 54.6
Haze_16076 Corylus avellana HOM05D001849 ORTHO05D004689 0.0e+00 1123.6 1175 55.3
PSO724G1390 Papaver somniferum HOM05D001849 ORTHO05D004689 0.0e+00 1122.8 1082 55.7
TPR.G29992 Trifolium pratense HOM05D001849 ORTHO05D004689 0.0e+00 1122.8 1098 55.6
Phvul.010G127100 Phaseolus vulgaris HOM05D001849 ORTHO05D004689 0.0e+00 1120.9 1085 57.5
CANSAT56G0878 Cannabis sativa HOM05D001849 ORTHO05D004689 0.0e+00 1118.6 1081 56.2
CSS0020628 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1113.2 1097 56.6
ClCG09G001140 Citrullus lanatus HOM05D001849 ORTHO05D004689 0.0e+00 1112.4 1141 53.5
Solyc12g049410.3 Solanum lycopersicum HOM05D001849 ORTHO05D004689 0.0e+00 1112.4 1017 57.6
Psat4g166880 Pisum sativum HOM05D001849 ORTHO05D004689 0.0e+00 1111.3 1114 54.2
PSO386G0179 Papaver somniferum HOM05D001849 ORTHO05D004689 0.0e+00 1108.2 1082 55.3
CsaV3_7G034250 Cucumis sativus L. HOM05D001849 ORTHO05D004689 0.0e+00 1105.1 1118 54.1
SGA_v2.0_scaffold4G02078 Striga asiatica HOM05D001849 ORTHO05D004689 0.0e+00 1103.6 1080 55.5
Aqoxy7G04006 Aquilegia oxysepala HOM05D001849 ORTHO05D004689 0.0e+00 1101.7 1084 54.2
arahy.Tifrunner.gnm1.ann1.RMM65D Arachis hypogaea HOM05D001849 ORTHO05D004689 0.0e+00 1095.9 1083 55.3
Lj9C535G6 Lonicera japonica HOM05D001849 ORTHO05D004689 0.0e+00 1095.5 1074 56.4
DCAR_026423 Daucus carota HOM05D001849 ORTHO05D004689 0.0e+00 1092.0 1093 54.3
arahy.Tifrunner.gnm1.ann1.1RN2YG Arachis hypogaea HOM05D001849 ORTHO05D004689 0.0e+00 1089.3 1083 55.0
AUR62001443 Chenopodium quinoa HOM05D001849 ORTHO05D004689 0.0e+00 1081.2 1096 54.1
FAN09G4066 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1080.9 1077 56.5
Peaxi162Scf00177g00518 Petunia axillaris HOM05D001849 ORTHO05D004689 0.0e+00 1077.0 1081 54.5
Lsat_1_v5_gn_4_91381 Lactuca sativa HOM05D001849 ORTHO05D004689 6.9e-309 1063.9 1097 53.2
ECA232G2821 Erigeron canadensis HOM05D001849 ORTHO05D004689 1.2e-308 1063.1 1082 54.4
Atru.chr2.1505 Acer truncatum HOM05D001849 ORTHO05D004689 7.4e-303 1043.9 870 62.3
HanXRQChr09g0277131 Helianthus annuus HOM05D001849 ORTHO05D004689 9.6e-303 1043.5 1082 52.4
ATR0681G401 Amborella trichopoda HOM05D001849 ORTHO05D004689 1.3e-302 1043.1 1091 51.5
AUR62009922 Chenopodium quinoa HOM05D001849 ORTHO05D004689 3.1e-301 1038.5 1112 52.7
SalBow7G1889 Salvia bowleyana HOM05D001849 ORTHO05D004689 5.8e-300 1034.2 1207 49.0
MELO3C024334.2 Cucumis melo HOM05D001849 ORTHO05D004689 3.2e-298 1028.5 1169 50.0
Oeu008524.4 Olea europaea HOM05D001849 ORTHO05D004689 3.1e-293 1011.9 1204 49.9
GSVIVG01016717001 Vitis vinifera HOM05D001849 ORTHO05D004689 4.5e-292 1008.1 870 60.3
Zm00001eb165950 Zea mays HOM05D001849 ORTHO05D004689 3.3e-287 991.9 1082 51.2
HPP92_022009 Vanilla planifolia HOM05D001849 ORTHO05D004689 2.6e-284 982.2 1091 50.3
Actinidia32206 Actinidia chinensis HOM05D001849 ORTHO05D004689 7.6e-284 980.7 1088 50.9
Cc04_g01040 Coffea canephora HOM05D001849 ORTHO05D004689 4.6e-281 971.5 891 57.5
Eucgr.K02038 Eucalyptus grandis HOM05D001849 ORTHO05D004689 6.7e-280 967.6 869 58.2
TAR626G0833 Trochodendron aralioides HOM05D001849 ORTHO05D004689 1.4e-277 959.9 848 59.1
CAN.G1243.9 Capsicum annuum HOM05D001849 ORTHO05D004689 5.0e-275 951.4 858 57.7
Dinv20408 Davidia involucrata HOM05D001849 ORTHO05D004689 9.7e-271 937.2 822 60.6
Hund18672 Selenicereus undatus HOM05D001849 ORTHO05D004689 1.3e-267 926.8 873 56.8
CDE06G0404 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 1.4e-264 916.8 1056 49.4
Lalb_Chr10g0101321 Lupinus albus HOM05D001849 ORTHO05D004689 8.8e-264 914.1 865 57.0
Migut.D00924 Erythranthe guttata HOM05D001849 ORTHO05D004689 1.2e-260 903.7 926 54.0
CSS0050059 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.2e-257 893.6 992 52.0
CSS0003623 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.7e-257 892.5 1048 50.4
Nitab4.5_0000189g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 5.3e-253 878.2 825 55.5
unitig_578.g16691 Utricularia gibba HOM05D001849 ORTHO05D004689 3.2e-250 869.0 1027 47.7
CDE07G1134 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 4.5e-236 822.0 862 51.4
BraA01t03995Z Brassica rapa HOM05D001849 ORTHO05D004689 1.6e-204 717.2 386 95.9
SHI25232 Sapria himalayana HOM05D001849 ORTHO05D004689 8.1e-201 704.9 894 45.6
Hma1.2p1_0229F.1_g096770 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 1.5e-199 700.7 700 54.7
AagrBONN_evm.TU.Sc2ySwM_362.2383 Anthoceros agrestis HOM05D001849 ORTHO05D004689 3.8e-198 696.0 1103 38.8
Mapoly0024s0112 Marchantia polymorpha HOM05D001849 ORTHO05D004689 2.4e-189 666.8 976 40.0
Pp3c8_15880 Physcomitrium patens HOM05D001849 ORTHO05D004689 4.2e-189 666.0 1117 37.8
CARHR088980 Cardamine hirsuta HOM05D001849 ORTHO05D004689 8.7e-187 658.3 351 94.6
Ca_23411_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 1.6e-180 637.5 608 56.1
Nitab4.5_0004322g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 1.2e-159 568.2 644 49.7
SMO304G0023 Selaginella moellendorffii HOM05D001849 ORTHO05D004689 2.2e-158 563.9 943 37.3
Hma1.2p1_0229F.1_g096760 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 2.1e-156 557.4 403 68.5
FAN05G4033 Fragaria x ananassa HOM05D001849 ORTHO05D004689 7.7e-143 512.3 397 68.5
Ca_23412_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 7.0e-136 489.2 365 69.9
Cpa.g.sc169.27 Carica papaya HOM05D001849 ORTHO05D004689 1.7e-134 484.6 318 74.8
Os11g0643700 Oryza sativa ssp. japonica HOM05D001849 ORTHO05D004689 1.7e-126 458.0 383 61.6
CBR_g39720 Chara braunii HOM05D001849 ORTHO05D004689 5.0e-118 429.9 1036 30.7
QL11p014752 Quercus lobata HOM05D001849 ORTHO05D004689 2.7e-71 274.6 290 50.0
Cpa.g.sc169.30 Carica papaya HOM05D001849 ORTHO05D004689 2.8e-60 238.0 177 66.1
SEGI_21815 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 6.2e-60 236.9 215 57.7
Glyma.16G010300 Glycine max HOM05D001849 ORTHO05D004689 9.0e-59 233.0 160 73.1
GSVIVG01016718001 Vitis vinifera HOM05D001849 ORTHO05D004689 7.9e-55 219.9 220 58.6
Lalb_Chr10g0101331 Lupinus albus HOM05D001849 ORTHO05D004689 1.1e-53 216.1 208 56.7
CSS0047517 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.4e-51 208.4 174 66.7
HPP92_021920 Vanilla planifolia HOM05D001849 ORTHO05D004689 5.1e-46 190.7 144 66.0
CSS0019722 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 8.8e-46 189.9 192 58.9
Cc04_g01050 Coffea canephora HOM05D001849 ORTHO05D004689 2.5e-45 188.3 212 53.8
Cpa.g.sc169.33 Carica papaya HOM05D001849 ORTHO05D004689 3.2e-40 171.4 175 55.4
CAN.G1243.8 Capsicum annuum HOM05D001849 ORTHO05D004689 5.5e-40 170.6 187 54.0
SEGI_09459 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 9.4e-40 169.9 170 52.9
MBI18_g40032_MAGBIO Magnolia biondii HOM05D000132 ORTHO05D000058 9.7e-37 159.8 196 49.5
Duzib235G0009 Durio zibethinus HOM05D001849 ORTHO05D004689 3.1e-35 154.8 174 52.3
Hund18673 Selenicereus undatus HOM05D001849 ORTHO05D004689 2.5e-32 145.2 175 52.0
Cpa.g.sc169.31 Carica papaya HOM05D001849 ORTHO05D004689 1.2e-31 142.9 90 77.8
SEGI_30532 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 1.8e-30 139.0 89 70.8
BcaNung06672 Brassica carinata HOM05D001849 ORTHO05D004689 5.2e-30 137.5 212 45.3
CDE07G1706 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 2.0e-29 135.6 207 44.9
CSS0036362 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.2e-26 126.3 102 58.8
TAR730G0002 Trochodendron aralioides HOM05D001849 ORTHO05D004689 1.3e-25 122.9 154 49.4
CSS0036461 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 5.0e-25 120.9 104 56.7
HanXRQChr11g0341991 Helianthus annuus HOM05D001849 ORTHO05D004689 2.5e-24 118.6 90 65.6
Cpa.g.sc169.29 Carica papaya HOM05D001849 ORTHO05D004689 5.5e-24 117.5 99 58.6
Cre10.g425675 Chlamydomonas reinhardtii HOM05D001849 ORTHO05D004689 4.8e-20 104.4 312 25.3
BolC2t10453H Brassica oleracea HOM05D001849 ORTHO05D004689 8.3e-20 103.6 55 96.4
PRCOL_00005073 Prasinoderma coloniale HOM05D001849 ORTHO05D004689 1.1e-19 103.2 346 28.0
MCO04G165 Micromonas commoda HOM05D001849 ORTHO05D004689 2.7e-18 98.6 449 24.7
C02p44100 Brassica napus HOM05D001849 ORTHO05D004689 3.5e-18 98.2 55 92.7
Atru.chr12.2396 Acer truncatum HOM05D001849 ORTHO05D004689 2.2e-17 95.5 138 45.7
SEGI_11558 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 8.5e-17 93.6 107 48.6
Lsat_1_v5_gn_3_42421 Lactuca sativa HOM05D001849 ORTHO05D004689 1.2e-15 89.7 87 56.3
MBI03_g16538_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 9.8e-13 80.1 75 53.3
MBI13_g27860_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 2.2e-12 79.0 55 65.5
CSS0004697 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.8e-12 78.6 104 41.3
Lsat_1_v5_gn_7_52500 Lactuca sativa HOM05D001849 ORTHO05D004689 3.7e-12 78.2 76 55.3
PGSC0003DMG402004368 Solanum tuberosum HOM05D001849 ORTHO05D004689 8.3e-12 77.0 71 53.5
MBI04_g26258_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 1.4e-11 76.3 54 63.0
SMO304G0058 Selaginella moellendorffii HOM05D042764 ORTHO05D004689 2.4e-11 75.5 192 30.2
Zm00001eb307710 Zea mays HOM05D001849 ORTHO05D004689 3.1e-11 75.1 70 60.0
MBI15_g17575_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 7.0e-11 73.9 51 66.7
CSS0002239 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.5e-08 66.2 41 78.0
CSS0017686 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 4.2e-08 64.7 50 64.0
Cpa.g.sc169.28 Carica papaya HOM05D001849 ORTHO05D004689 7.2e-08 63.9 37 75.7
Atru.chr12.2376 Acer truncatum HOM05D001849 ORTHO05D004689 2.8e-07 62.0 83 48.2


User provided reference genes

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