Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p09690 Brassica napus HOM05D005140 ORTHO05D006288 1.5e-276 955.7 537 100.0
BraA01t00912Z Brassica rapa HOM05D005140 ORTHO05D006288 2.3e-248 862.1 549 92.0
BcaC09g51625 Brassica carinata HOM05D005140 ORTHO05D006288 2.0e-247 859.0 535 93.1
C01p11300 Brassica napus HOM05D005140 ORTHO05D006288 2.4e-245 852.0 537 90.1
Sp7g16510 Schrenkiella parvula HOM05D005140 ORTHO05D006288 1.3e-243 846.3 543 88.8
Carub.0007s2375 Capsella rubella HOM05D005140 ORTHO05D006288 4.2e-242 841.3 545 88.3
BcaNung00074 Brassica carinata HOM05D005140 ORTHO05D006288 3.6e-241 838.2 546 88.6
CARHR224350 Cardamine hirsuta HOM05D005140 ORTHO05D006288 7.7e-236 820.5 541 86.5
AT4G17620 Arabidopsis thaliana HOM05D005140 ORTHO05D006288 1.2e-233 813.1 542 84.7
A03p50570 Brassica napus HOM05D005140 ORTHO05D006288 5.7e-231 804.3 541 84.8
BcaNung03452 Brassica carinata HOM05D005140 ORTHO05D006288 1.8e-229 799.3 430 90.9
BcaC06g33554 Brassica carinata HOM05D005140 ORTHO05D006288 3.1e-229 798.5 538 84.8
BraA03t14147Z Brassica rapa HOM05D005140 ORTHO05D006288 6.6e-227 790.8 542 83.8
Thhalv10024864m.g Eutrema salsugineum HOM05D005140 ORTHO05D006288 1.4e-224 783.1 542 84.1
BolC7t45397H Brassica oleracea HOM05D005140 ORTHO05D006288 2.2e-222 775.8 445 86.7
C07p48890 Brassica napus HOM05D005140 ORTHO05D006288 1.4e-221 773.1 445 86.5
BcaNung06713 Brassica carinata HOM05D005140 ORTHO05D006288 1.2e-217 760.0 408 93.4
Aa31LG6G380 Aethionema arabicum HOM05D005140 ORTHO05D006288 2.0e-215 752.7 446 83.9
THA.LOC104798349 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 8.3e-206 720.7 534 76.0
Thecc.03G238100 Theobroma cacao HOM05D005140 ORTHO05D006288 1.8e-184 649.8 443 72.9
Gorai.004G191200 Gossypium raimondii HOM05D005140 ORTHO05D006288 2.0e-183 646.4 439 73.1
Sed0013740 Sechium edule HOM05D005140 ORTHO05D006288 4.9e-182 641.7 422 73.0
Gohir.D08G182300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 1.1e-181 640.6 439 72.7
ClCG09G012630 Citrullus lanatus HOM05D005140 ORTHO05D006288 2.4e-181 639.4 449 69.5
MELO3C003340.2 Cucumis melo HOM05D005140 ORTHO05D006288 2.1e-180 636.3 450 69.3
CsaV3_3G049760 Cucumis sativus L. HOM05D005140 ORTHO05D006288 7.9e-180 634.4 450 69.1
Ca_24617_v3 Cicer arietinum L. HOM05D005140 ORTHO05D006288 1.0e-179 634.0 449 70.6
FvH4_5g20680 Fragaria vesca HOM05D005140 ORTHO05D006288 1.0e-179 634.0 427 72.1
FAN13G1317 Fragaria x ananassa HOM05D005140 ORTHO05D006288 2.3e-179 632.9 427 72.4
Glyma.01G204000 Glycine max HOM05D005140 ORTHO05D006288 2.3e-179 632.9 437 72.3
FAN04G2093 Fragaria x ananassa HOM05D005140 ORTHO05D006288 5.1e-179 631.7 427 72.1
Lalb_Chr09g0324091 Lupinus albus HOM05D005140 ORTHO05D006288 5.1e-179 631.7 428 72.0
Phvul.002G002400 Phaseolus vulgaris HOM05D005140 ORTHO05D006288 6.6e-179 631.3 443 71.3
Atru.chr9.1157 Acer truncatum HOM05D005140 ORTHO05D006288 1.1e-178 630.6 440 71.4
RcHm_v2.0_Chr7g0206411 Rosa chinensis HOM05D005140 ORTHO05D006288 1.1e-178 630.6 426 71.8
FAN08G1378 Fragaria x ananassa HOM05D005140 ORTHO05D006288 1.9e-178 629.8 426 72.1
Manes.01G182900 Manihot esculenta HOM05D005140 ORTHO05D006288 2.5e-178 629.4 418 74.4
Cc08_g11170 Coffea canephora HOM05D005140 ORTHO05D006288 4.3e-178 628.6 450 69.8
Haze_08349 Corylus avellana HOM05D005140 ORTHO05D006288 7.3e-178 627.9 431 71.5
QL12p008469 Quercus lobata HOM05D005140 ORTHO05D006288 2.1e-177 626.3 455 69.7
COL.COLO4_06693 Corchorus olitorius HOM05D005140 ORTHO05D006288 4.8e-177 625.2 443 70.4
CANSAT21G2106 Cannabis sativa HOM05D005140 ORTHO05D006288 8.1e-177 624.4 437 69.8
CiPaw.12G056200 Carya illinoinensis HOM05D005140 ORTHO05D006288 8.1e-177 624.4 423 72.1
Rhsim07G0119600 Rhododendron simsii HOM05D005140 ORTHO05D006288 8.1e-177 624.4 435 72.2
SGA_v2.0_scaffold20G09272 Striga asiatica HOM05D005140 ORTHO05D006288 8.1e-177 624.4 448 69.0
MSTRG.13768 Avicennia marina HOM05D005140 ORTHO05D006288 1.1e-176 624.0 449 68.6
Lj2g0026795 Lotus japonicus HOM05D005140 ORTHO05D006288 1.1e-176 624.0 429 70.9
Dinv25152 Davidia involucrata HOM05D005140 ORTHO05D006288 1.4e-176 623.6 438 71.0
Glyma.11G039000 Glycine max HOM05D005140 ORTHO05D006288 1.4e-176 623.6 438 71.0
Psat2g175480 Pisum sativum HOM05D005140 ORTHO05D006288 3.1e-176 622.5 447 70.0
Prupe.5G053400 Prunus persica HOM05D005140 ORTHO05D006288 3.1e-176 622.5 453 69.3
Migut.F01520 Erythranthe guttata HOM05D005140 ORTHO05D006288 9.0e-176 620.9 450 68.4
PGR031G2829 Punica granatum HOM05D005140 ORTHO05D006288 9.0e-176 620.9 427 71.9
arahy.Tifrunner.gnm1.ann1.FH98R9 Arachis hypogaea HOM05D005140 ORTHO05D006288 2.0e-175 619.8 451 68.3
arahy.Tifrunner.gnm1.ann1.W7TPG2 Arachis hypogaea HOM05D005140 ORTHO05D006288 2.0e-175 619.8 451 68.3
Sopen08g026270 Solanum pennellii HOM05D005140 ORTHO05D006288 2.0e-175 619.8 420 72.4
Sed0020438 Sechium edule HOM05D005140 ORTHO05D006288 3.4e-175 619.0 423 70.2
Gohir.A08G162300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 4.5e-175 618.6 439 71.5
Solyc08g077750.4 Solanum lycopersicum HOM05D005140 ORTHO05D006288 5.8e-175 618.2 420 72.1
Hund14471 Selenicereus undatus HOM05D005140 ORTHO05D006288 9.9e-175 617.5 429 71.3
Actinidia31490 Actinidia chinensis HOM05D005140 ORTHO05D006288 3.8e-174 615.5 477 65.6
CAN.G572.25 Capsicum annuum HOM05D005140 ORTHO05D006288 4.9e-174 615.1 420 70.7
TWI60G0080 Tripterygium wilfordii HOM05D005140 ORTHO05D006288 4.9e-174 615.1 423 71.4
Eucgr.D02138 Eucalyptus grandis HOM05D005140 ORTHO05D006288 1.9e-173 613.2 459 68.0
Nn6g33739 Nelumbo nucifera HOM05D005140 ORTHO05D006288 3.2e-173 612.5 426 70.2
Peaxi162Scf00301g01111 Petunia axillaris HOM05D005140 ORTHO05D006288 4.2e-173 612.1 425 69.9
Potri.001G149900 Populus trichocarpa HOM05D005140 ORTHO05D006288 4.2e-173 612.1 418 72.5
vmacro23518 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 1.6e-172 610.1 424 72.2
DCAR_008319 Daucus carota HOM05D005140 ORTHO05D006288 3.5e-172 609.0 419 70.4
PSO063G3549 Papaver somniferum HOM05D005140 ORTHO05D006288 3.5e-172 609.0 428 71.0
PSO782G2508 Papaver somniferum HOM05D005140 ORTHO05D006288 1.3e-171 607.1 428 70.8
Lsat_1_v5_gn_6_94760 Lactuca sativa HOM05D005140 ORTHO05D006288 3.9e-171 605.5 448 68.3
MD00G1132300 Malus domestica HOM05D005140 ORTHO05D006288 1.1e-170 604.0 447 68.7
TAR636G3078 Trochodendron aralioides HOM05D005140 ORTHO05D006288 1.9e-170 603.2 430 68.1
Medtr5g013580 Medicago truncatula HOM05D005140 ORTHO05D006288 5.6e-170 601.7 425 72.0
Duzib068G0986 Durio zibethinus HOM05D005140 ORTHO05D006288 9.6e-170 600.9 427 71.4
Sabra01G0119900 Salix brachista HOM05D005140 ORTHO05D006288 1.3e-169 600.5 484 64.5
Aqoxy3G02576 Aquilegia oxysepala HOM05D005140 ORTHO05D006288 1.8e-168 596.7 427 69.3
unitig_699.g19774 Utricularia gibba HOM05D005140 ORTHO05D006288 1.2e-167 594.0 449 66.1
TPR.G22969 Trifolium pratense HOM05D005140 ORTHO05D006288 1.5e-167 593.6 427 69.3
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 1.7e-166 590.1 441 66.2
MD06G1045500 Malus domestica HOM05D005140 ORTHO05D006288 2.2e-166 589.7 459 66.0
EL10Ac5g12239 Beta vulgaris HOM05D005140 ORTHO05D006288 1.4e-165 587.0 475 63.6
Dinv28888 Davidia involucrata HOM05D005140 ORTHO05D006288 7.1e-165 584.7 409 70.2
Ciclev10019303m.g Citrus clementina HOM05D005140 ORTHO05D006288 3.5e-164 582.4 396 71.0
GSVIVG01013286001 Vitis vinifera HOM05D005140 ORTHO05D006288 3.0e-163 579.3 349 78.5
Ah.12g053860 Amaranthus hybridus HOM05D005140 ORTHO05D006288 1.5e-162 577.0 418 68.4
vmacro14121 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 2.8e-161 572.8 424 68.9
Aa31LG9G15140 Aethionema arabicum HOM05D005140 ORTHO05D006288 4.5e-159 565.5 461 62.5
Nitab4.5_0004689g0020 Nicotiana tabacum HOM05D005140 ORTHO05D006288 1.7e-158 563.5 435 65.3
THA.LOC104814458 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 2.2e-158 563.1 464 63.1
HPP92_020526 Vanilla planifolia HOM05D005140 ORTHO05D006288 4.6e-156 555.4 423 65.0
HanXRQChr03g0089631 Helianthus annuus HOM05D005140 ORTHO05D006288 1.0e-155 554.3 424 67.0
Nitab4.5_0012059g0010 Nicotiana tabacum HOM05D005140 ORTHO05D006288 3.0e-155 552.7 452 62.8
Nn1g00730 Nelumbo nucifera HOM05D005140 ORTHO05D006288 1.8e-152 543.5 417 65.5
AUR62007191 Chenopodium quinoa HOM05D005140 ORTHO05D006288 4.1e-152 542.3 386 68.7
HPP92_028085 Vanilla planifolia HOM05D005140 ORTHO05D006288 1.5e-151 540.4 423 64.5
ATR0665G273 Amborella trichopoda HOM05D005140 ORTHO05D006288 1.0e-150 537.7 424 64.2
FAN18G3556 Fragaria x ananassa HOM05D005140 ORTHO05D006288 1.9e-149 533.5 390 67.7
VMungo0239G0001 Vigna mungo HOM05D005140 ORTHO05D006288 3.9e-147 525.8 313 78.3
HPP92_022002 Vanilla planifolia HOM05D005140 ORTHO05D006288 6.7e-147 525.0 422 61.6
SGA_v2.0_scaffold6G03141 Striga asiatica HOM05D005140 ORTHO05D006288 3.1e-144 516.2 390 66.7
MBI04_g38568_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 2.5e-141 506.5 400 62.8
AUR62018812 Chenopodium quinoa HOM05D005140 ORTHO05D006288 6.7e-139 498.4 322 73.3
Lj9A525T29 Lonicera japonica HOM05D005140 ORTHO05D006288 1.3e-137 494.2 377 65.3
Lj2C253G13 Lonicera japonica HOM05D005140 ORTHO05D006288 9.1e-136 488.0 452 57.5
CDE04G2928 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 5.9e-135 485.3 403 61.8
BolC1t01096H Brassica oleracea HOM05D005140 ORTHO05D006288 5.0e-134 482.3 227 99.1
MBI04_g46822_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 2.2e-121 440.3 345 62.9
Zm00001eb287280 Zea mays HOM05D005140 ORTHO05D006288 6.5e-118 428.7 293 70.0
Sc01g0007900 Simmondsia chinensis HOM05D005140 ORTHO05D006288 8.8e-115 418.3 325 65.2
Os05g0392100 Oryza sativa ssp. japonica HOM05D005140 ORTHO05D006288 4.4e-114 416.0 339 62.2
AagrBONN_evm.TU.Sc2ySwM_344.2637 Anthoceros agrestis HOM05D005140 ORTHO05D006288 2.8e-113 413.3 412 55.3
Pp3c10_5020 Physcomitrium patens HOM05D005140 ORTHO05D006288 1.1e-112 411.4 452 52.0
Hma1.2p1_1672F.1_g296780 Hydrangea macrophylla HOM05D005140 ORTHO05D006288 8.0e-108 395.2 312 67.9
GSVIVG01013283001 Vitis vinifera HOM05D005140 ORTHO05D006288 6.8e-107 392.1 450 53.3
Mapoly0062s0029 Marchantia polymorpha HOM05D005140 ORTHO05D006288 1.1e-104 384.8 354 54.2
SHI07711 Sapria himalayana HOM05D005140 ORTHO05D006288 4.0e-99 366.3 329 59.0
SMO259G0041 Selaginella moellendorffii HOM05D005140 ORTHO05D006288 8.9e-99 365.2 324 52.8
CDE12G0612 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 6.6e-94 349.0 311 57.9
Oeu017029.1 Olea europaea HOM05D005140 ORTHO05D006288 7.3e-93 345.5 190 81.6
CBR_g48842 Chara braunii HOM05D005140 ORTHO05D006288 6.8e-83 312.4 433 45.7
Peaxi162Scf00715g00010 Petunia axillaris HOM05D005140 ORTHO05D006288 9.9e-74 282.0 224 63.8
Cpa.g.sc98.58 Carica papaya HOM05D005140 ORTHO05D006288 3.5e-71 273.5 259 56.0
Psat1g146680 Pisum sativum HOM05D005140 ORTHO05D006288 2.5e-48 197.6 115 80.0
Oeu017031.1 Olea europaea HOM05D005140 ORTHO05D006288 9.6e-45 185.7 135 67.4
QL12p008508 Quercus lobata HOM05D005140 ORTHO05D006288 3.1e-43 180.6 188 57.4
Oeu062963.3 Olea europaea HOM05D005140 ORTHO05D006288 1.1e-40 172.2 273 43.2
MCO13G373 Micromonas commoda HOM05D005140 ORTHO05D006288 2.0e-34 151.4 294 33.7
Thecc.03G238400 Theobroma cacao HOM05D005140 ORTHO05D006288 2.1e-31 141.4 120 62.5
BolC1t01095H Brassica oleracea HOM05D005140 ORTHO05D006288 8.2e-28 129.4 150 85.3
MD10G1199900 Malus domestica HOM05D005140 ORTHO05D006288 2.9e-25 120.9 79 72.2
Cpa.g.c32337.2 Carica papaya HOM05D005140 ORTHO05D006288 1.1e-24 119.0 110 61.8
SEGI_19334 Sequoiadendron giganteum HOM05D005140 ORTHO05D000001 3.0e-22 110.9 77 68.8
Cre07.g338400 Chlamydomonas reinhardtii HOM05D005140 ORTHO05D006288 4.4e-21 107.1 255 32.2
Cfa024662 Carpinus fangiana HOM05D005140 ORTHO05D006288 3.1e-19 100.9 198 36.9
GSVIVG01001794001 Vitis vinifera HOM05D005140 ORTHO05D006288 1.2e-18 99.0 79 63.3
DCAR_016064 Daucus carota HOM05D005140 ORTHO05D006288 2.9e-09 67.8 52 57.7
Gohir.A08G083762 Gossypium hirsutum HOM05D005140 ORTHO05D006288 8.5e-09 66.2 29 89.7
Psat6g107920 Pisum sativum HOM05D032184 ORTHO05D330502 4.0e-06 57.4 28 89.3


User provided reference genes

Program Settings