Gene family expansion analysis   top

Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.

Gene family
ORTHO03M004643
Gene count gene family
7
Total coding gene count
503,231
Keywords

Organisms

Organism Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Zea mays39,32307.81%0%0
Sorghum bicolor34,60906.88%0%0
Setaria italica35,55307.06%0%0
Oryza sativa ssp. japonica40,73808.1%0%0
Oryza sativa ssp. indica49,20209.78%0%0
Brachypodium distachyon26,63215.29%14.29%2.7
Hordeum vulgare24,31804.83%0%0
Musa acuminata36,63817.28%14.29%1.96
Arabidopsis thaliana27,41615.45%14.29%2.62
Carica papaya28,02715.57%14.29%2.57
Populus trichocarpa41,43408.23%0%0
Vitis vinifera26,50405.27%0%0
Solanum lycopersicum34,81316.92%14.29%2.07
Physcomitrella patens32,40006.44%0%0
Ostreococcus lucimarinus7,80511.55%14.29%9.22
Chlamydomonas reinhardtii17,81913.54%14.29%4.04

Phylogenetic clades

Clade Num species Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Andropogoneae273,932014.69%0%0
Panicoideae3109,485021.76%0%0
Oryza289,940017.87%0%0
Pooideae250,950110.12%14.29%1.41
BEP_Clade4140,890128%14.29%0.51
Poaceae7250,375149.75%14.29%0.29
Monocots8287,013257.03%28.57%0.5
Brassicales255,443211.02%28.57%2.59
Rosids1396,877219.25%28.57%1.48
Rosids4123,381224.52%28.57%1.17
Dicots5158,194331.44%42.86%1.36
Angiosperms13445,207588.47%71.43%0.81
Embryophyta14477,607594.91%71.43%0.75
Chlorophyta225,62425.09%28.57%5.61
Viridiplantae16503,2317100%100%1