Gene family expansion analysis   top

Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.

Gene family
ORTHO03M003335
Gene count gene family
8
Total coding gene count
503,231
Keywords

Organisms

Organism Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Zea mays39,32307.81%0%0
Sorghum bicolor34,60916.88%12.5%1.82
Setaria italica35,55307.06%0%0
Oryza sativa ssp. japonica40,73808.1%0%0
Oryza sativa ssp. indica49,20209.78%0%0
Brachypodium distachyon26,63215.29%12.5%2.36
Hordeum vulgare24,31814.83%12.5%2.59
Musa acuminata36,63817.28%12.5%1.72
Arabidopsis thaliana27,41615.45%12.5%2.29
Carica papaya28,02705.57%0%0
Populus trichocarpa41,43408.23%0%0
Vitis vinifera26,50405.27%0%0
Solanum lycopersicum34,81316.92%12.5%1.81
Physcomitrella patens32,40016.44%12.5%1.94
Ostreococcus lucimarinus7,80501.55%0%0
Chlamydomonas reinhardtii17,81913.54%12.5%3.53

Phylogenetic clades

Clade Num species Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Andropogoneae273,932114.69%12.5%0.85
Panicoideae3109,485121.76%12.5%0.57
Oryza289,940017.87%0%0
Pooideae250,950210.12%25%2.47
BEP_Clade4140,890228%25%0.89
Poaceae7250,375349.75%37.5%0.75
Monocots8287,013457.03%50%0.88
Brassicales255,443111.02%12.5%1.13
Rosids1396,877119.25%12.5%0.65
Rosids4123,381124.52%12.5%0.51
Dicots5158,194231.44%25%0.8
Angiosperms13445,207688.47%75%0.85
Embryophyta14477,607794.91%87.5%0.92
Chlorophyta225,62415.09%12.5%2.46
Viridiplantae16503,2318100%100%1