Gene family expansion analysis   top

Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.

Gene family
ORTHO03M002113
Gene count gene family
9
Total coding gene count
503,231
Keywords

Organisms

Organism Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Zea mays39,32317.81%11.11%1.42
Sorghum bicolor34,60906.88%0%0
Setaria italica35,55307.06%0%0
Oryza sativa ssp. japonica40,73818.1%11.11%1.37
Oryza sativa ssp. indica49,20219.78%11.11%1.14
Brachypodium distachyon26,63215.29%11.11%2.1
Hordeum vulgare24,31804.83%0%0
Musa acuminata36,63817.28%11.11%1.53
Arabidopsis thaliana27,41615.45%11.11%2.04
Carica papaya28,02705.57%0%0
Populus trichocarpa41,43408.23%0%0
Vitis vinifera26,50405.27%0%0
Solanum lycopersicum34,81306.92%0%0
Physcomitrella patens32,40026.44%22.22%3.45
Ostreococcus lucimarinus7,80511.55%11.11%7.17
Chlamydomonas reinhardtii17,81903.54%0%0

Phylogenetic clades

Clade Num species Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Andropogoneae273,932114.69%11.11%0.76
Panicoideae3109,485121.76%11.11%0.51
Oryza289,940217.87%22.22%1.24
Pooideae250,950110.12%11.11%1.1
BEP_Clade4140,890328%33.33%1.19
Poaceae7250,375449.75%44.44%0.89
Monocots8287,013557.03%55.56%0.97
Brassicales255,443111.02%11.11%1.01
Rosids1396,877119.25%11.11%0.58
Rosids4123,381124.52%11.11%0.45
Dicots5158,194131.44%11.11%0.35
Angiosperms13445,207688.47%66.67%0.75
Embryophyta14477,607894.91%88.89%0.94
Chlorophyta225,62415.09%11.11%2.18
Viridiplantae16503,2319100%100%1