Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03M000378
- Gene count gene family
- 159
- Total coding gene count
- 503,231
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Zea mays | 39,323 | 9 | 7.81% | 5.66% | 0.72 |
Sorghum bicolor | 34,609 | 8 | 6.88% | 5.03% | 0.73 |
Setaria italica | 35,553 | 10 | 7.06% | 6.29% | 0.89 |
Oryza sativa ssp. japonica | 40,738 | 10 | 8.1% | 6.29% | 0.78 |
Oryza sativa ssp. indica | 49,202 | 11 | 9.78% | 6.92% | 0.71 |
Brachypodium distachyon | 26,632 | 6 | 5.29% | 3.77% | 0.71 |
Hordeum vulgare | 24,318 | 6 | 4.83% | 3.77% | 0.78 |
Musa acuminata | 36,638 | 16 | 7.28% | 10.06% | 1.38 |
Arabidopsis thaliana | 27,416 | 11 | 5.45% | 6.92% | 1.27 |
Carica papaya | 28,027 | 11 | 5.57% | 6.92% | 1.24 |
Populus trichocarpa | 41,434 | 16 | 8.23% | 10.06% | 1.22 |
Vitis vinifera | 26,504 | 14 | 5.27% | 8.81% | 1.67 |
Solanum lycopersicum | 34,813 | 17 | 6.92% | 10.69% | 1.54 |
Physcomitrella patens | 32,400 | 8 | 6.44% | 5.03% | 0.78 |
Ostreococcus lucimarinus | 7,805 | 1 | 1.55% | 0.63% | 0.41 |
Chlamydomonas reinhardtii | 17,819 | 5 | 3.54% | 3.14% | 0.89 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Andropogoneae | 2 | 73,932 | 17 | 14.69% | 10.69% | 0.73 |
Panicoideae | 3 | 109,485 | 27 | 21.76% | 16.98% | 0.78 |
Oryza | 2 | 89,940 | 21 | 17.87% | 13.21% | 0.74 |
Pooideae | 2 | 50,950 | 12 | 10.12% | 7.55% | 0.75 |
BEP_Clade | 4 | 140,890 | 33 | 28% | 20.75% | 0.74 |
Poaceae | 7 | 250,375 | 60 | 49.75% | 37.74% | 0.76 |
Monocots | 8 | 287,013 | 76 | 57.03% | 47.8% | 0.84 |
Brassicales | 2 | 55,443 | 22 | 11.02% | 13.84% | 1.26 |
Rosids1 | 3 | 96,877 | 38 | 19.25% | 23.9% | 1.24 |
Rosids | 4 | 123,381 | 52 | 24.52% | 32.7% | 1.33 |
Dicots | 5 | 158,194 | 69 | 31.44% | 43.4% | 1.38 |
Angiosperms | 13 | 445,207 | 145 | 88.47% | 91.19% | 1.03 |
Embryophyta | 14 | 477,607 | 153 | 94.91% | 96.23% | 1.01 |
Chlorophyta | 2 | 25,624 | 6 | 5.09% | 3.77% | 0.74 |
Viridiplantae | 16 | 503,231 | 159 | 100% | 100% | 1 |