Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03M000293
- Gene count gene family
- 189
- Total coding gene count
- 503,231
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Zea mays | 39,323 | 19 | 7.81% | 10.05% | 1.29 |
Sorghum bicolor | 34,609 | 14 | 6.88% | 7.41% | 1.08 |
Setaria italica | 35,553 | 14 | 7.06% | 7.41% | 1.05 |
Oryza sativa ssp. japonica | 40,738 | 14 | 8.1% | 7.41% | 0.91 |
Oryza sativa ssp. indica | 49,202 | 18 | 9.78% | 9.52% | 0.97 |
Brachypodium distachyon | 26,632 | 12 | 5.29% | 6.35% | 1.2 |
Hordeum vulgare | 24,318 | 15 | 4.83% | 7.94% | 1.64 |
Musa acuminata | 36,638 | 34 | 7.28% | 17.99% | 2.47 |
Arabidopsis thaliana | 27,416 | 13 | 5.45% | 6.88% | 1.26 |
Carica papaya | 28,027 | 7 | 5.57% | 3.7% | 0.66 |
Populus trichocarpa | 41,434 | 11 | 8.23% | 5.82% | 0.71 |
Vitis vinifera | 26,504 | 6 | 5.27% | 3.17% | 0.6 |
Solanum lycopersicum | 34,813 | 9 | 6.92% | 4.76% | 0.69 |
Physcomitrella patens | 32,400 | 2 | 6.44% | 1.06% | 0.16 |
Ostreococcus lucimarinus | 7,805 | 0 | 1.55% | 0% | 0 |
Chlamydomonas reinhardtii | 17,819 | 1 | 3.54% | 0.53% | 0.15 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Andropogoneae | 2 | 73,932 | 33 | 14.69% | 17.46% | 1.19 |
Panicoideae | 3 | 109,485 | 47 | 21.76% | 24.87% | 1.14 |
Oryza | 2 | 89,940 | 32 | 17.87% | 16.93% | 0.95 |
Pooideae | 2 | 50,950 | 27 | 10.12% | 14.29% | 1.41 |
BEP_Clade | 4 | 140,890 | 59 | 28% | 31.22% | 1.12 |
Poaceae | 7 | 250,375 | 106 | 49.75% | 56.08% | 1.13 |
Monocots | 8 | 287,013 | 140 | 57.03% | 74.07% | 1.3 |
Brassicales | 2 | 55,443 | 20 | 11.02% | 10.58% | 0.96 |
Rosids1 | 3 | 96,877 | 31 | 19.25% | 16.4% | 0.85 |
Rosids | 4 | 123,381 | 37 | 24.52% | 19.58% | 0.8 |
Dicots | 5 | 158,194 | 46 | 31.44% | 24.34% | 0.77 |
Angiosperms | 13 | 445,207 | 186 | 88.47% | 98.41% | 1.11 |
Embryophyta | 14 | 477,607 | 188 | 94.91% | 99.47% | 1.05 |
Chlorophyta | 2 | 25,624 | 1 | 5.09% | 0.53% | 0.1 |
Viridiplantae | 16 | 503,231 | 189 | 100% | 100% | 1 |