Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03M000228
- Gene count gene family
- 223
- Total coding gene count
- 503,231
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Zea mays | 39,323 | 17 | 7.81% | 7.62% | 0.98 |
Sorghum bicolor | 34,609 | 10 | 6.88% | 4.48% | 0.65 |
Setaria italica | 35,553 | 13 | 7.06% | 5.83% | 0.83 |
Oryza sativa ssp. japonica | 40,738 | 15 | 8.1% | 6.73% | 0.83 |
Oryza sativa ssp. indica | 49,202 | 14 | 9.78% | 6.28% | 0.64 |
Brachypodium distachyon | 26,632 | 16 | 5.29% | 7.17% | 1.36 |
Hordeum vulgare | 24,318 | 16 | 4.83% | 7.17% | 1.48 |
Musa acuminata | 36,638 | 22 | 7.28% | 9.87% | 1.36 |
Arabidopsis thaliana | 27,416 | 17 | 5.45% | 7.62% | 1.4 |
Carica papaya | 28,027 | 13 | 5.57% | 5.83% | 1.05 |
Populus trichocarpa | 41,434 | 26 | 8.23% | 11.66% | 1.42 |
Vitis vinifera | 26,504 | 14 | 5.27% | 6.28% | 1.19 |
Solanum lycopersicum | 34,813 | 19 | 6.92% | 8.52% | 1.23 |
Physcomitrella patens | 32,400 | 7 | 6.44% | 3.14% | 0.49 |
Ostreococcus lucimarinus | 7,805 | 2 | 1.55% | 0.9% | 0.58 |
Chlamydomonas reinhardtii | 17,819 | 2 | 3.54% | 0.9% | 0.25 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Andropogoneae | 2 | 73,932 | 27 | 14.69% | 12.11% | 0.82 |
Panicoideae | 3 | 109,485 | 40 | 21.76% | 17.94% | 0.82 |
Oryza | 2 | 89,940 | 29 | 17.87% | 13% | 0.73 |
Pooideae | 2 | 50,950 | 32 | 10.12% | 14.35% | 1.42 |
BEP_Clade | 4 | 140,890 | 61 | 28% | 27.35% | 0.98 |
Poaceae | 7 | 250,375 | 101 | 49.75% | 45.29% | 0.91 |
Monocots | 8 | 287,013 | 123 | 57.03% | 55.16% | 0.97 |
Brassicales | 2 | 55,443 | 30 | 11.02% | 13.45% | 1.22 |
Rosids1 | 3 | 96,877 | 56 | 19.25% | 25.11% | 1.3 |
Rosids | 4 | 123,381 | 70 | 24.52% | 31.39% | 1.28 |
Dicots | 5 | 158,194 | 89 | 31.44% | 39.91% | 1.27 |
Angiosperms | 13 | 445,207 | 212 | 88.47% | 95.07% | 1.07 |
Embryophyta | 14 | 477,607 | 219 | 94.91% | 98.21% | 1.03 |
Chlorophyta | 2 | 25,624 | 4 | 5.09% | 1.79% | 0.35 |
Viridiplantae | 16 | 503,231 | 223 | 100% | 100% | 1 |