Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03M000128
- Gene count gene family
- 366
- Total coding gene count
- 503,231
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Zea mays | 39,323 | 32 | 7.81% | 8.74% | 1.12 |
Sorghum bicolor | 34,609 | 25 | 6.88% | 6.83% | 0.99 |
Setaria italica | 35,553 | 25 | 7.06% | 6.83% | 0.97 |
Oryza sativa ssp. japonica | 40,738 | 25 | 8.1% | 6.83% | 0.84 |
Oryza sativa ssp. indica | 49,202 | 29 | 9.78% | 7.92% | 0.81 |
Brachypodium distachyon | 26,632 | 24 | 5.29% | 6.56% | 1.24 |
Hordeum vulgare | 24,318 | 21 | 4.83% | 5.74% | 1.19 |
Musa acuminata | 36,638 | 35 | 7.28% | 9.56% | 1.31 |
Arabidopsis thaliana | 27,416 | 26 | 5.45% | 7.1% | 1.3 |
Carica papaya | 28,027 | 20 | 5.57% | 5.46% | 0.98 |
Populus trichocarpa | 41,434 | 32 | 8.23% | 8.74% | 1.06 |
Vitis vinifera | 26,504 | 21 | 5.27% | 5.74% | 1.09 |
Solanum lycopersicum | 34,813 | 27 | 6.92% | 7.38% | 1.07 |
Physcomitrella patens | 32,400 | 20 | 6.44% | 5.46% | 0.85 |
Ostreococcus lucimarinus | 7,805 | 0 | 1.55% | 0% | 0 |
Chlamydomonas reinhardtii | 17,819 | 4 | 3.54% | 1.09% | 0.31 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Andropogoneae | 2 | 73,932 | 57 | 14.69% | 15.57% | 1.06 |
Panicoideae | 3 | 109,485 | 82 | 21.76% | 22.4% | 1.03 |
Oryza | 2 | 89,940 | 54 | 17.87% | 14.75% | 0.83 |
Pooideae | 2 | 50,950 | 45 | 10.12% | 12.3% | 1.22 |
BEP_Clade | 4 | 140,890 | 99 | 28% | 27.05% | 0.97 |
Poaceae | 7 | 250,375 | 181 | 49.75% | 49.45% | 0.99 |
Monocots | 8 | 287,013 | 216 | 57.03% | 59.02% | 1.03 |
Brassicales | 2 | 55,443 | 46 | 11.02% | 12.57% | 1.14 |
Rosids1 | 3 | 96,877 | 78 | 19.25% | 21.31% | 1.11 |
Rosids | 4 | 123,381 | 99 | 24.52% | 27.05% | 1.1 |
Dicots | 5 | 158,194 | 126 | 31.44% | 34.43% | 1.1 |
Angiosperms | 13 | 445,207 | 342 | 88.47% | 93.44% | 1.06 |
Embryophyta | 14 | 477,607 | 362 | 94.91% | 98.91% | 1.04 |
Chlorophyta | 2 | 25,624 | 4 | 5.09% | 1.09% | 0.21 |
Viridiplantae | 16 | 503,231 | 366 | 100% | 100% | 1 |