Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03M000066
- Gene count gene family
- 654
- Total coding gene count
- 503,231
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Zea mays | 39,323 | 46 | 7.81% | 7.03% | 0.9 |
Sorghum bicolor | 34,609 | 58 | 6.88% | 8.87% | 1.29 |
Setaria italica | 35,553 | 64 | 7.06% | 9.79% | 1.39 |
Oryza sativa ssp. japonica | 40,738 | 54 | 8.1% | 8.26% | 1.02 |
Oryza sativa ssp. indica | 49,202 | 60 | 9.78% | 9.17% | 0.94 |
Brachypodium distachyon | 26,632 | 51 | 5.29% | 7.8% | 1.47 |
Hordeum vulgare | 24,318 | 39 | 4.83% | 5.96% | 1.23 |
Musa acuminata | 36,638 | 48 | 7.28% | 7.34% | 1.01 |
Arabidopsis thaliana | 27,416 | 46 | 5.45% | 7.03% | 1.29 |
Carica papaya | 28,027 | 32 | 5.57% | 4.89% | 0.88 |
Populus trichocarpa | 41,434 | 51 | 8.23% | 7.8% | 0.95 |
Vitis vinifera | 26,504 | 48 | 5.27% | 7.34% | 1.39 |
Solanum lycopersicum | 34,813 | 48 | 6.92% | 7.34% | 1.06 |
Physcomitrella patens | 32,400 | 8 | 6.44% | 1.22% | 0.19 |
Ostreococcus lucimarinus | 7,805 | 1 | 1.55% | 0.15% | 0.1 |
Chlamydomonas reinhardtii | 17,819 | 0 | 3.54% | 0% | 0 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Andropogoneae | 2 | 73,932 | 104 | 14.69% | 15.9% | 1.08 |
Panicoideae | 3 | 109,485 | 168 | 21.76% | 25.69% | 1.18 |
Oryza | 2 | 89,940 | 114 | 17.87% | 17.43% | 0.98 |
Pooideae | 2 | 50,950 | 90 | 10.12% | 13.76% | 1.36 |
BEP_Clade | 4 | 140,890 | 204 | 28% | 31.19% | 1.11 |
Poaceae | 7 | 250,375 | 372 | 49.75% | 56.88% | 1.14 |
Monocots | 8 | 287,013 | 420 | 57.03% | 64.22% | 1.13 |
Brassicales | 2 | 55,443 | 78 | 11.02% | 11.93% | 1.08 |
Rosids1 | 3 | 96,877 | 129 | 19.25% | 19.72% | 1.02 |
Rosids | 4 | 123,381 | 177 | 24.52% | 27.06% | 1.1 |
Dicots | 5 | 158,194 | 225 | 31.44% | 34.4% | 1.09 |
Angiosperms | 13 | 445,207 | 645 | 88.47% | 98.62% | 1.11 |
Embryophyta | 14 | 477,607 | 653 | 94.91% | 99.85% | 1.05 |
Chlorophyta | 2 | 25,624 | 1 | 5.09% | 0.15% | 0.03 |
Viridiplantae | 16 | 503,231 | 654 | 100% | 100% | 1 |