Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03M000015
- Gene count gene family
- 1744
- Total coding gene count
- 503,231
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Zea mays | 39,323 | 61 | 7.81% | 3.5% | 0.45 |
Sorghum bicolor | 34,609 | 193 | 6.88% | 11.07% | 1.61 |
Setaria italica | 35,553 | 221 | 7.06% | 12.67% | 1.79 |
Oryza sativa ssp. japonica | 40,738 | 265 | 8.1% | 15.19% | 1.88 |
Oryza sativa ssp. indica | 49,202 | 336 | 9.78% | 19.27% | 1.97 |
Brachypodium distachyon | 26,632 | 165 | 5.29% | 9.46% | 1.79 |
Hordeum vulgare | 24,318 | 185 | 4.83% | 10.61% | 2.2 |
Musa acuminata | 36,638 | 18 | 7.28% | 1.03% | 0.14 |
Arabidopsis thaliana | 27,416 | 21 | 5.45% | 1.2% | 0.22 |
Carica papaya | 28,027 | 10 | 5.57% | 0.57% | 0.1 |
Populus trichocarpa | 41,434 | 50 | 8.23% | 2.87% | 0.35 |
Vitis vinifera | 26,504 | 58 | 5.27% | 3.33% | 0.63 |
Solanum lycopersicum | 34,813 | 161 | 6.92% | 9.23% | 1.33 |
Physcomitrella patens | 32,400 | 0 | 6.44% | 0% | 0 |
Ostreococcus lucimarinus | 7,805 | 0 | 1.55% | 0% | 0 |
Chlamydomonas reinhardtii | 17,819 | 0 | 3.54% | 0% | 0 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Andropogoneae | 2 | 73,932 | 254 | 14.69% | 14.56% | 0.99 |
Panicoideae | 3 | 109,485 | 475 | 21.76% | 27.24% | 1.25 |
Oryza | 2 | 89,940 | 601 | 17.87% | 34.46% | 1.93 |
Pooideae | 2 | 50,950 | 350 | 10.12% | 20.07% | 1.98 |
BEP_Clade | 4 | 140,890 | 951 | 28% | 54.53% | 1.95 |
Poaceae | 7 | 250,375 | 1,426 | 49.75% | 81.77% | 1.64 |
Monocots | 8 | 287,013 | 1,444 | 57.03% | 82.8% | 1.45 |
Brassicales | 2 | 55,443 | 31 | 11.02% | 1.78% | 0.16 |
Rosids1 | 3 | 96,877 | 81 | 19.25% | 4.64% | 0.24 |
Rosids | 4 | 123,381 | 139 | 24.52% | 7.97% | 0.33 |
Dicots | 5 | 158,194 | 300 | 31.44% | 17.2% | 0.55 |
Angiosperms | 13 | 445,207 | 1,744 | 88.47% | 100% | 1.13 |
Embryophyta | 14 | 477,607 | 1,744 | 94.91% | 100% | 1.05 |
Chlorophyta | 2 | 25,624 | 0 | 5.09% | 0% | 0 |
Viridiplantae | 16 | 503,231 | 1,744 | 100% | 100% | 1 |