Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03M000013
- Gene count gene family
- 1897
- Total coding gene count
- 503,231
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Zea mays | 39,323 | 176 | 7.81% | 9.28% | 1.19 |
Sorghum bicolor | 34,609 | 119 | 6.88% | 6.27% | 0.91 |
Setaria italica | 35,553 | 118 | 7.06% | 6.22% | 0.88 |
Oryza sativa ssp. japonica | 40,738 | 118 | 8.1% | 6.22% | 0.77 |
Oryza sativa ssp. indica | 49,202 | 135 | 9.78% | 7.12% | 0.73 |
Brachypodium distachyon | 26,632 | 100 | 5.29% | 5.27% | 1 |
Hordeum vulgare | 24,318 | 87 | 4.83% | 4.59% | 0.95 |
Musa acuminata | 36,638 | 287 | 7.28% | 15.13% | 2.08 |
Arabidopsis thaliana | 27,416 | 130 | 5.45% | 6.85% | 1.26 |
Carica papaya | 28,027 | 90 | 5.57% | 4.74% | 0.85 |
Populus trichocarpa | 41,434 | 197 | 8.23% | 10.38% | 1.26 |
Vitis vinifera | 26,504 | 132 | 5.27% | 6.96% | 1.32 |
Solanum lycopersicum | 34,813 | 137 | 6.92% | 7.22% | 1.04 |
Physcomitrella patens | 32,400 | 55 | 6.44% | 2.9% | 0.45 |
Ostreococcus lucimarinus | 7,805 | 6 | 1.55% | 0.32% | 0.21 |
Chlamydomonas reinhardtii | 17,819 | 10 | 3.54% | 0.53% | 0.15 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Andropogoneae | 2 | 73,932 | 295 | 14.69% | 15.55% | 1.06 |
Panicoideae | 3 | 109,485 | 413 | 21.76% | 21.77% | 1 |
Oryza | 2 | 89,940 | 253 | 17.87% | 13.34% | 0.75 |
Pooideae | 2 | 50,950 | 187 | 10.12% | 9.86% | 0.97 |
BEP_Clade | 4 | 140,890 | 440 | 28% | 23.19% | 0.83 |
Poaceae | 7 | 250,375 | 853 | 49.75% | 44.97% | 0.9 |
Monocots | 8 | 287,013 | 1,140 | 57.03% | 60.09% | 1.05 |
Brassicales | 2 | 55,443 | 220 | 11.02% | 11.6% | 1.05 |
Rosids1 | 3 | 96,877 | 417 | 19.25% | 21.98% | 1.14 |
Rosids | 4 | 123,381 | 549 | 24.52% | 28.94% | 1.18 |
Dicots | 5 | 158,194 | 686 | 31.44% | 36.16% | 1.15 |
Angiosperms | 13 | 445,207 | 1,826 | 88.47% | 96.26% | 1.09 |
Embryophyta | 14 | 477,607 | 1,881 | 94.91% | 99.16% | 1.04 |
Chlorophyta | 2 | 25,624 | 16 | 5.09% | 0.84% | 0.17 |
Viridiplantae | 16 | 503,231 | 1,897 | 100% | 100% | 1 |