PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Eucalyptus grandis	scaffold_10	17	CH_egr_498	5	6	0.000000420976
Eucalyptus grandis	scaffold_10	17	CH_egr_715	5	13	0.0000879305
Eucalyptus grandis	scaffold_7	17	CH_egr_640	5	10	0.0000174144
Glycine max	Gm06	17	CH_gma_246	6	12	0.0000028492
Gossypium raimondii	Chr11	17	CH_gra_263	5	10	0.0000908482
Malus domestica	10	17	CH_mdo_172	5	12	0.0000321121
Oryza sativa ssp. japonica	7	17	CH_osa_315	4	6	0.0000852609
Populus trichocarpa	Chr17	17	CH_ptr_341	4	4	0.0000471971
Vitis vinifera	chr18	17	CH_vvi_277	4	4	0.0000196622

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V