PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Citrus sinensis	scaffold00348	17	CH_csi_103	5	9	0.00000299139
Eucalyptus grandis	scaffold_2	17	CH_egr_649	4	5	0.0000223507
Glycine max	Gm18	17	CH_gma_492	5	17	0.000962821
Populus trichocarpa	Chr07	17	CH_ptr_178	6	9	0.0000000299019
Populus trichocarpa	Chr08	17	CH_ptr_360	4	5	0.0000881578
Prunus persica	scaffold_1	17	CH_ppe_139	6	6	0.00000000272894
Prunus persica	scaffold_1	17	CH_ppe_239	7	21	0.00000194969
Prunus persica	scaffold_4	17	CH_ppe_303	8	46	0.0000251609
Prunus persica	scaffold_8	17	CH_ppe_329	4	4	0.0000603809
Prunus persica	scaffold_4	18	CH_ppe_96	10	88	0.0000147928
Ricinus communis	30178	17	CH_rco_260	3	3	0.00060267
Solanum lycopersicum	ch02	17	CH_sly_275	6	21	0.0000132875
Solanum lycopersicum	ch11	17	CH_sly_264	5	9	0.0000073949
Vitis vinifera	chr5	17	CH_vvi_375	4	7	0.000236222

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V