PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	1	18	CH_ath_80	11	16	0.0000736089
Eucalyptus grandis	scaffold_10	18	CH_egr_270	53	300	0.000452266
Eucalyptus grandis	scaffold_2	18	CH_egr_253	10	13	0.0000597021
Gossypium raimondii	Chr09	19	CH_gra_7	8	9	0.000544821
Oryza sativa ssp. japonica	1	18	CH_osa_107	13	32	0.000101904
Oryza sativa ssp. japonica	2	18	CH_osa_116	31	188	0.000331948
Populus trichocarpa	Chr04	18	CH_ptr_115	16	36	0.000775172
Solanum lycopersicum	ch08	17	CH_sly_245	12	16	0.00000395033
Solanum lycopersicum	ch03	18	CH_sly_83	10	12	0.0000253718
Vitis vinifera	chr6	18	CH_vvi_113	10	15	0.000652683

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V