PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Type: Mapman term
Identifier: 20.1.7.6.1
Description: stress.biotic.PR-proteins.proteinase inhibitors.trypsin inhibitor

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Brassica rapa	A02	17	CH_bra_15	9	70	0.000000000000535281
Brassica rapa	A04	17	CH_bra_91	4	6	0.000000408256
Brassica rapa	A07	17	CH_bra_4	12	77	1.03213e-19
Brassica rapa	A07	18	CH_bra_4	12	77	1.03213e-19
Capsella rubella	scaffold_2	17	CH_cru_84	4	4	0.00000000242789
Glycine max	Gm08	17	CH_gma_73	6	14	0.00000000000766711
Glycine max	Gm09	17	CH_gma_12	12	15	1.62101e-32
Glycine max	Gm09	18	CH_gma_12	12	15	1.62101e-32
Gossypium raimondii	Chr11	17	CH_gra_38	6	6	1.7103e-17
Malus domestica	11	17	CH_mdo_278	2	2	0.000461585
Populus trichocarpa	Chr04	17	CH_ptr_275	3	4	0.00000428598
Populus trichocarpa	Chr17	17	CH_ptr_74	5	5	0.0000000000000602468
Ricinus communis	29636	17	CH_rco_90	3	3	0.00000005786
Solanum lycopersicum	ch06	17	CH_sly_195	3	3	0.000000417935
Vitis vinifera	chr17	17	CH_vvi_59	6	12	0.00000000000000148175

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V