PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	2	17	CH_ath_255	3	3	0.0000174092
Arabidopsis thaliana	5	17	CH_ath_201	4	9	0.00000162721
Brassica rapa	A09	17	CH_bra_218	3	4	0.000158138
Capsella rubella	scaffold_2	17	CH_cru_207	4	11	0.0000157317
Chlamydomonas reinhardtii	chromosome_12	17	CH_cre_7	4	5	0.000000000110421
Oryza sativa ssp. japonica	4	17	CH_osa_33	7	15	9.51742e-16
Oryza sativa ssp. japonica	7	17	CH_osa_160	4	8	0.000000169465
Solanum lycopersicum	ch01	17	CH_sly_295	3	3	0.0000223645
Solanum lycopersicum	ch10	17	CH_sly_382	3	5	0.000223362

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V