PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	3	17	CH_ath_171	3	3	0.000000185995
Eucalyptus grandis	scaffold_11	17	CH_egr_556	3	3	0.00000288727
Eucalyptus grandis	scaffold_8	17	CH_egr_25	11	13	6.37731e-33
Eucalyptus grandis	scaffold_8	18	CH_egr_27	11	13	6.37731e-33
Glycine max	Gm13	17	CH_gma_427	2	2	0.000370872
Gossypium raimondii	Chr11	17	CH_gra_201	3	5	0.0000036204
Populus trichocarpa	Chr10	17	CH_ptr_475	2	2	0.000749719
Prunus persica	scaffold_6	17	CH_ppe_405	2	2	0.00043251
Ricinus communis	29929	17	CH_rco_248	2	2	0.000589188
Solanum lycopersicum	ch06	17	CH_sly_117	4	7	0.00000000252638
Vitis vinifera	chr5	17	CH_vvi_46	7	16	2.09222e-17

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V