PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Beta vulgaris	Bvchr5.sca025	13	CH_bvu_258	3	3	0.0000283099
Beta vulgaris	Bvchr5.sca025	15	CH_bvu_3	3	3	0.0000159453
Citrus sinensis	scaffold00050	13	CH_csi_104	4	4	0.000000110705
Eucalyptus grandis	scaffold_5	13	CH_egr_534	5	7	0.00000000430223
Eucalyptus grandis	scaffold_7	13	CH_egr_173	8	9	4.19346e-18
Fragaria vesca	LG2	13	CH_fve_236	4	5	0.000000149248
Glycine max	Gm17	13	CH_gma_824	3	4	0.000996661
Medicago truncatula	chr3	13	CH_mtr_507	4	7	0.000000249045
Oryza sativa ssp. japonica	2	13	CH_osa_508	3	3	0.0000235691
Physcomitrella patens	scaffold_1	13	CH_ppa_37	3	4	0.00000954302
Solanum tuberosum	chr05	13	CH_stu_663	3	3	0.0000142211

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V