PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR017441
Description: Protein kinase, ATP binding site

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	3	14	CH_ath_37	20	133	0.0000000906946
Brassica rapa	A02	13	CH_bra_508	6	9	0.000911073
Citrullus lanatus	Chr4	13	CH_cla_220	6	7	0.0000154501
Cucumis melo	CM3.5_scaffold00011	13	CH_cme_461	7	18	0.00061551
Cucumis melo	CM3.5_scaffold00011	14	CH_cme_34	18	161	0.0000544562
Eucalyptus grandis	scaffold_1	13	CH_egr_1064	6	6	0.000149246
Eucalyptus grandis	scaffold_3	13	CH_egr_952	8	11	0.0000358613
Eucalyptus grandis	scaffold_6	13	CH_egr_853	7	7	0.00000601762
Eucalyptus grandis	scaffold_8	13	CH_egr_358	20	44	0.00000000000291958
Eucalyptus grandis	scaffold_9	13	CH_egr_852	7	7	0.00000601762
Eucalyptus grandis	scaffold_11	14	CH_egr_160	38	154	0.00000000000000463096
Eucalyptus grandis	scaffold_8	14	CH_egr_158	30	91	0.00000000000000386937
Eucalyptus grandis	scaffold_9	14	CH_egr_263	25	156	0.000146718
Fragaria vesca	LG7	13	CH_fve_487	10	45	0.00013541
Fragaria vesca	LG7	14	CH_fve_57	10	45	0.00013541
Glycine max	Gm07	13	CH_gma_89	14	20	0.000000000000162892
Glycine max	Gm15	13	CH_gma_219	9	10	0.00000000361207
Glycine max	Gm07	14	CH_gma_39	14	20	0.000000000000162892
Medicago truncatula	chr1	13	CH_mtr_203	11	15	0.000000000000754771
Medicago truncatula	chr1	13	CH_mtr_22	30	58	2.00972e-34
Medicago truncatula	chr1	14	CH_mtr_114	11	15	0.000000000000754771
Medicago truncatula	chr1	14	CH_mtr_8	46	107	7.73469e-50
Oryza sativa ssp. japonica	1	13	CH_osa_10	30	52	2.45256e-33
Populus trichocarpa	scaffold_67	13	CH_ptr_623	8	16	0.000166641
Prunus persica	scaffold_3	13	CH_ppe_480	7	11	0.0000323282
Prunus persica	scaffold_6	13	CH_ppe_628	12	58	0.000236024
Solanum lycopersicum	ch07	13	CH_sly_477	6	8	0.0000486879
Solanum tuberosum	chr01	13	CH_stu_641	14	68	0.000010789
Solanum tuberosum	chr07	13	CH_stu_916	5	5	0.00020079
Solanum tuberosum	chr01	14	CH_stu_117	23	133	0.00000000115316
Thellungiella parvula	ch5-1	13	CH_tpa_70	18	77	0.00000000632502
Thellungiella parvula	ch5-1	14	CH_tpa_7	19	86	0.00000000412016
Zea mays	5	13	CH_zma_469	6	9	0.000424771
Zea mays	8	13	CH_zma_35	14	23	0.000000000000235701
Zea mays	8	14	CH_zma_16	14	23	0.000000000000235701

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V