PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_2	13	CH_aly_250	5	13	0.000000980649
Arabidopsis lyrata	scaffold_8	13	CH_aly_485	3	3	0.000226151
Arabidopsis thaliana	1	13	CH_ath_587	3	4	0.000971305
Arabidopsis thaliana	4	13	CH_ath_127	5	5	0.000000000841369
Arabidopsis thaliana	5	13	CH_ath_217	4	4	0.000000455954
Brassica rapa	A09	13	CH_bra_379	3	3	0.000280991
Capsella rubella	scaffold_2	13	CH_cru_331	5	18	0.0000189976
Capsella rubella	scaffold_6	13	CH_cru_240	4	4	0.000000961446
Citrus sinensis	scaffold00007	13	CH_csi_270	3	3	0.000143661
Fragaria vesca	LG3	13	CH_fve_470	3	3	0.000105415
Fragaria vesca	LG7	13	CH_fve_273	4	5	0.000000740873
Gossypium raimondii	Chr11	13	CH_gra_601	3	4	0.00085726
Medicago truncatula	chr8	13	CH_mtr_477	4	5	0.000000126753
Populus trichocarpa	Chr11	13	CH_ptr_243	6	14	0.00000000484893
Populus trichocarpa	Chr14	13	CH_ptr_751	4	15	0.000673509
Prunus persica	scaffold_4	13	CH_ppe_702	3	4	0.000472725
Solanum tuberosum	chr04	13	CH_stu_958	3	4	0.000336034
Thellungiella parvula	ch2-4	13	CH_tpa_244	3	3	0.000185679

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V