PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0051707
Description: response to other organism

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_1	6	CH_aly_72	10	20	0.0000835811
Arabidopsis thaliana	1	2	CH_ath_303	11	19	0.000130506
Arabidopsis thaliana	1	3	CH_ath_321	11	19	0.000132407
Arabidopsis thaliana	1	5	CH_ath_110	11	19	0.000130506
Arabidopsis thaliana	1	6	CH_ath_117	11	19	0.000132407
Brassica rapa	A04	5	CH_bra_29	11	28	0.000157766
Brassica rapa	A04	6	CH_bra_42	11	28	0.000200496
Capsella rubella	scaffold_1	2	CH_cru_256	9	16	0.000220844
Capsella rubella	scaffold_1	3	CH_cru_353	9	16	0.000547536
Capsella rubella	scaffold_2	5	CH_cru_38	11	17	0.000000529008
Capsella rubella	scaffold_2	6	CH_cru_54	11	17	0.00000162509
Capsella rubella	scaffold_3	6	CH_cru_58	41	254	0.00000218072
Eucalyptus grandis	scaffold_10	2	CH_egr_794	7	13	0.000926612
Eucalyptus grandis	scaffold_10	3	CH_egr_880	7	13	0.000985072
Medicago truncatula	chr2	5	CH_mtr_164	12	70	0.0000415843
Medicago truncatula	chr2	6	CH_mtr_196	12	70	0.0000430299
Solanum lycopersicum	ch06	2	CH_sly_391	7	14	0.000272854
Solanum lycopersicum	ch06	3	CH_sly_514	7	14	0.000275289
Solanum lycopersicum	ch01	6	CH_sly_169	23	258	0.000751891
Solanum tuberosum	chr02	5	CH_stu_178	10	41	0.000887719
Solanum tuberosum	chr02	6	CH_stu_236	10	41	0.000918839

Available child term results

GO term	Description	Number of clusters
GO:0002213	defense response to insect	2
GO:0002215	defense response to nematode	12
GO:0002229	defense response to oomycetes	4
GO:0002230	positive regulation of defense response to virus by host	23
GO:0002238	response to molecule of fungal origin	15
GO:0009615	response to virus	60
GO:0009616	virus induced gene silencing	5
GO:0009617	response to bacterium	14
GO:0009620	response to fungus	6
GO:0009624	response to nematode	14
GO:0009625	response to insect	2
GO:0009814	defense response, incompatible interaction	3
GO:0009816	defense response to bacterium, incompatible interaction	20
GO:0009817	defense response to fungus, incompatible interaction	5
GO:0009818	defense response to protozoan, incompatible interaction	1
GO:0009861	jasmonic acid and ethylene-dependent systemic resistance	8
GO:0009864	induced systemic resistance, jasmonic acid mediated signaling pathway	1
GO:0009866	induced systemic resistance, ethylene mediated signaling pathway	1
GO:0009868	jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway	2
GO:0010113	negative regulation of systemic acquired resistance	1
GO:0016045	detection of bacterium	2
GO:0042742	defense response to bacterium	22
GO:0050688	regulation of defense response to virus	4
GO:0050691	regulation of defense response to virus by host	4
GO:0050832	defense response to fungus	35
GO:0051607	defense response to virus	4
GO:0052033	pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	10
GO:0060154	cellular process regulating host cell cycle in response to virus	2
GO:0080185	effector dependent induction by symbiont of host immune response	2
GO:0098542	defense response to other organism	4
GO:1900425	negative regulation of defense response to bacterium	25
GO:1902290	positive regulation of defense response to oomycetes	14

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V