PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_2	3	CH_aly_135	5	5	0.00000022111
Arabidopsis lyrata	scaffold_7	3	CH_aly_75	6	6	0.00000000127753
Arabidopsis lyrata	scaffold_7	3	CH_aly_233	4	4	0.0000380621
Arabidopsis lyrata	scaffold_8	3	CH_aly_92	6	7	0.00000000889836
Arabidopsis lyrata	scaffold_8	3	CH_aly_62	8	15	0.000000000260519
Capsella rubella	scaffold_3	3	CH_cru_213	4	4	0.0000161185
Capsella rubella	scaffold_5	3	CH_cru_214	4	4	0.0000161185
Capsella rubella	scaffold_7	3	CH_cru_79	6	6	0.000000000381698
Capsella rubella	scaffold_8	3	CH_cru_325	5	16	0.000328843
Manihot esculenta	scaffold10563	3	CH_mes_289	2	2	0.000569476
Solanum lycopersicum	ch08	1	CH_sly_336	2	2	0.000172122
Thellungiella parvula	ch5-1	3	CH_tpa_30	5	5	0.000000000288008
Thellungiella parvula	ch7-5	3	CH_tpa_8	7	7	6.39561e-16
Zea mays	10	1	CH_zma_198	2	2	0.00030175
Zea mays	10	2	CH_zma_209	2	2	0.00030175
Zea mays	10	3	CH_zma_278	2	2	0.00030175
Zea mays	10	7	CH_zma_12	2	2	0.000325089
Zea mays	10	8	CH_zma_9	2	2	0.000325089
Zea mays	10	9	CH_zma_13	2	2	0.000325089

GO term	Description	Number of clusters
GO:0031640	killing of cells of other organism	40

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V