PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0038023
Description: signaling receptor activity

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00019	4	CH_atr_15	10	26	5.86386e-19
Amborella trichopoda	scaffold00019	5	CH_atr_15	10	26	5.65835e-17
Carica papaya	supercontig_9	1	CH_cpa_174	3	4	0.00069687
Carica papaya	supercontig_136	3	CH_cpa_168	4	7	0.0000465449
Citrus sinensis	scaffold00025	1	CH_csi_22	6	6	0.00000000000655955
Eucalyptus grandis	scaffold_6	5	CH_egr_153	10	89	0.00000000453163
Eucalyptus grandis	scaffold_6	6	CH_egr_197	10	89	0.0000000241634
Fragaria vesca	LG2	1	CH_fve_5	11	16	1.28809e-22
Fragaria vesca	LG2	4	CH_fve_5	11	16	1.28809e-22
Lotus japonicus	chr1	1	CH_lja_24	4	6	0.000000204166
Lotus japonicus	chr1	2	CH_lja_57	4	6	0.00000265415
Medicago truncatula	chr3	1	CH_mtr_414	3	4	0.00008568
Medicago truncatula	chr3	3	CH_mtr_349	4	4	0.000000275778
Oryza sativa ssp. japonica	6	4	CH_osa_43	10	143	0.00000000000223979
Populus trichocarpa	Chr06	1	CH_ptr_36	13	24	3.64378e-18
Populus trichocarpa	Chr06	2	CH_ptr_41	13	24	1.92564e-17
Populus trichocarpa	Chr06	3	CH_ptr_34	15	25	3.68595e-21
Populus trichocarpa	Chr06	4	CH_ptr_30	13	24	3.64378e-18
Populus trichocarpa	Chr06	5	CH_ptr_31	13	24	1.92564e-17
Populus trichocarpa	Chr06	6	CH_ptr_28	15	25	3.68595e-21
Prunus persica	scaffold_8	1	CH_ppe_272	9	70	0.000197768
Prunus persica	scaffold_1	2	CH_ppe_106	13	69	0.00000000158242
Prunus persica	scaffold_8	2	CH_ppe_395	9	70	0.000433773
Prunus persica	scaffold_1	3	CH_ppe_133	13	69	0.00000000213501
Prunus persica	scaffold_8	3	CH_ppe_486	9	70	0.000530632
Prunus persica	scaffold_8	4	CH_ppe_99	10	92	0.000150762
Prunus persica	scaffold_1	5	CH_ppe_46	17	133	0.000000000172089
Prunus persica	scaffold_8	5	CH_ppe_62	20	279	0.0000000451627
Prunus persica	scaffold_8	5	CH_ppe_118	10	92	0.000357659
Prunus persica	scaffold_1	6	CH_ppe_63	17	133	0.000000000253146
Prunus persica	scaffold_8	6	CH_ppe_74	21	279	0.00000000751023
Prunus persica	scaffold_8	6	CH_ppe_149	10	92	0.000446331
Theobroma cacao	scaffold_9	1	CH_tca_28	7	8	0.00000000000000338215

Available child term results

GO term	Description	Number of clusters
GO:0000155	phosphorelay sensor kinase activity	4
GO:0001653	peptide receptor activity	4
GO:0004675	transmembrane receptor protein serine/threonine kinase activity	5
GO:0004888	transmembrane signaling receptor activity	59
GO:0004930	G-protein coupled receptor activity	4
GO:0004965	G-protein coupled GABA receptor activity	29
GO:0004999	vasoactive intestinal polypeptide receptor activity	3
GO:0005034	osmosensor activity	2
GO:0008066	glutamate receptor activity	1
GO:0008158	hedgehog receptor activity	2
GO:0016524	latrotoxin receptor activity	3

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V