PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0016717
Description: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_1	1	CH_aly_81	5	34	0.000000203192
Arabidopsis lyrata	scaffold_1	2	CH_aly_127	5	34	0.000000666151
Arabidopsis lyrata	scaffold_1	3	CH_aly_149	5	34	0.000000666151
Arabidopsis thaliana	1	1	CH_ath_72	6	34	0.00000000394717
Arabidopsis thaliana	3	1	CH_ath_47	5	6	0.0000000000299958
Arabidopsis thaliana	1	2	CH_ath_95	6	34	0.00000000512766
Arabidopsis thaliana	3	2	CH_ath_65	5	6	0.0000000000371368
Arabidopsis thaliana	1	3	CH_ath_106	6	34	0.00000000512766
Arabidopsis thaliana	3	3	CH_ath_71	5	6	0.0000000000371368
Brassica rapa	A03	1	CH_bra_32	4	4	0.0000000087066
Brassica rapa	A09	1	CH_bra_86	3	3	0.0000134962
Brassica rapa	A03	2	CH_bra_48	4	4	0.000000019194
Brassica rapa	A09	2	CH_bra_147	3	3	0.0000241743
Brassica rapa	A03	3	CH_bra_71	4	4	0.0000000335016
Brassica rapa	A09	3	CH_bra_194	3	3	0.0000364923
Capsella rubella	scaffold_1	1	CH_cru_120	3	3	0.00000489351
Capsella rubella	scaffold_1	2	CH_cru_175	3	3	0.00000996179
Capsella rubella	scaffold_3	2	CH_cru_197	3	4	0.0000398263
Capsella rubella	scaffold_1	3	CH_cru_207	3	3	0.0000116221
Capsella rubella	scaffold_3	3	CH_cru_232	3	4	0.0000464626
Citrullus lanatus	Chr7	1	CH_cla_93	3	3	0.00000494447
Citrullus lanatus	Chr7	2	CH_cla_110	3	3	0.00000738953
Citrullus lanatus	Chr7	3	CH_cla_143	3	3	0.00000886744
Cucumis melo	CM3.5_scaffold00031	1	CH_cme_12	8	12	5.83335e-20
Cucumis melo	CM3.5_scaffold00031	2	CH_cme_11	8	12	1.81315e-19
Cucumis melo	CM3.5_scaffold00031	3	CH_cme_18	8	12	4.88022e-19
Fragaria vesca	LG6	2	CH_fve_100	5	21	0.0000000655249
Fragaria vesca	LG6	3	CH_fve_137	5	21	0.0000000827353
Malus domestica	17	1	CH_mdo_93	3	3	0.00000425065
Malus domestica	17	2	CH_mdo_108	3	3	0.00000566008
Malus domestica	17	3	CH_mdo_56	4	4	0.00000000604128
Oryza sativa ssp. japonica	7	3	CH_osa_249	3	4	0.0000117613
Prunus persica	scaffold_3	1	CH_ppe_113	4	4	0.0000000168014
Prunus persica	scaffold_4	1	CH_ppe_91	5	9	0.00000000167433
Prunus persica	scaffold_4	1	CH_ppe_49	6	9	0.000000000000845579
Prunus persica	scaffold_3	2	CH_ppe_135	4	4	0.0000000230106
Prunus persica	scaffold_4	2	CH_ppe_65	6	9	0.00000000000138342
Prunus persica	scaffold_4	2	CH_ppe_109	5	9	0.00000000250097
Prunus persica	scaffold_3	3	CH_ppe_170	4	4	0.0000000404132
Prunus persica	scaffold_4	3	CH_ppe_51	7	9	0.00000000000000133733
Prunus persica	scaffold_4	3	CH_ppe_87	6	9	0.00000000000332637
Solanum lycopersicum	ch12	3	CH_sly_117	5	6	0.0000000000981437
Solanum tuberosum	chr12	1	CH_stu_51	9	17	4.70662e-19
Solanum tuberosum	chr12	1	CH_stu_458	3	5	0.000377201
Solanum tuberosum	chr12	2	CH_stu_536	3	5	0.000443622
Solanum tuberosum	chr12	2	CH_stu_50	9	17	8.01419e-19
Solanum tuberosum	chr12	3	CH_stu_9	16	19	1.31303e-40
Solanum tuberosum	chr12	3	CH_stu_756	3	5	0.000736642
Solanum tuberosum	chr12	6	CH_stu_12	16	19	1.31303e-40
Thellungiella parvula	ch3-1	1	CH_tpa_88	3	5	0.0000643602
Thellungiella parvula	ch3-1	2	CH_tpa_131	3	5	0.0000917024
Thellungiella parvula	ch3-1	2	CH_tpa_132	3	5	0.0000917024
Thellungiella parvula	ch3-1	3	CH_tpa_160	3	5	0.0000917024
Thellungiella parvula	ch3-1	3	CH_tpa_159	3	5	0.0000917024
Theobroma cacao	scaffold_6	3	CH_tca_293	3	5	0.0000568372

Available child term results

GO term	Description	Number of clusters
GO:0000248	C-5 sterol desaturase activity	5
GO:0000249	C-22 sterol desaturase activity	17
GO:0004768	stearoyl-CoA 9-desaturase activity	5
GO:0045300	acyl-[acyl-carrier-protein] desaturase activity	45

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V