PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0016616
Description: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Capsella rubella	scaffold_7	4	CH_cru_14	10	26	0.000000000152532
Capsella rubella	scaffold_7	5	CH_cru_26	10	26	0.000000000496998
Capsella rubella	scaffold_7	6	CH_cru_32	10	26	0.000000000561947
Citrus sinensis	scaffold00010	4	CH_csi_11	10	25	0.00000000000210663
Citrus sinensis	scaffold00010	5	CH_csi_11	10	25	0.0000000000119268
Citrus sinensis	scaffold00010	6	CH_csi_15	10	25	0.000000000016573
Cucumis melo	CM3.5_scaffold00067	1	CH_cme_100	4	4	0.0000114321
Cucumis melo	CM3.5_scaffold00067	2	CH_cme_130	4	4	0.0000319448
Glycine max	Gm08	4	CH_gma_24	10	16	0.000000000000336993
Glycine max	Gm09	4	CH_gma_34	10	33	0.00000000345699
Glycine max	Gm15	4	CH_gma_28	11	32	0.0000000000374925
Glycine max	Gm08	5	CH_gma_25	10	16	0.000000000000797431
Glycine max	Gm15	5	CH_gma_30	11	32	0.000000000095902
Glycine max	Gm08	6	CH_gma_36	10	16	0.00000000000149841
Glycine max	Gm15	6	CH_gma_48	11	32	0.000000000190663
Gossypium raimondii	Chr11	5	CH_gra_56	10	42	0.000000224073
Gossypium raimondii	Chr11	6	CH_gra_65	10	42	0.000000278877
Medicago truncatula	chr2	4	CH_mtr_86	10	81	0.000000000968388
Ostreococcus lucimarinus	Chr_18	2	CH_olu_33	8	56	0.000304216
Ostreococcus lucimarinus	Chr_18	3	CH_olu_34	8	56	0.000571251
Populus trichocarpa	Chr02	6	CH_ptr_112	12	96	0.0000153171
Ricinus communis	30174	1	CH_rco_136	4	5	0.00006506
Ricinus communis	30174	2	CH_rco_177	4	5	0.000150801
Solanum tuberosum	chr02	1	CH_stu_355	5	11	0.0000558807
Solanum tuberosum	chr02	2	CH_stu_434	5	11	0.000158519
Vitis vinifera	chr15	6	CH_vvi_128	10	114	0.000331968

Available child term results

GO term	Description	Number of clusters
GO:0003854	3-beta-hydroxy-delta5-steroid dehydrogenase activity	27
GO:0003857	3-hydroxyacyl-CoA dehydrogenase activity	3
GO:0003862	3-isopropylmalate dehydrogenase activity	18
GO:0003938	IMP dehydrogenase activity	9
GO:0003939	L-iditol 2-dehydrogenase activity	10
GO:0003979	UDP-glucose 6-dehydrogenase activity	10
GO:0004022	alcohol dehydrogenase (NAD) activity	12
GO:0004033	aldo-keto reductase (NADP) activity	3
GO:0004345	glucose-6-phosphate dehydrogenase activity	9
GO:0004367	glycerol-3-phosphate dehydrogenase [NAD+] activity	3
GO:0004412	homoserine dehydrogenase activity	2
GO:0004420	hydroxymethylglutaryl-CoA reductase (NADPH) activity	18
GO:0004449	isocitrate dehydrogenase (NAD+) activity	7
GO:0004450	isocitrate dehydrogenase (NADP+) activity	4
GO:0004455	ketol-acid reductoisomerase activity	10
GO:0004459	L-lactate dehydrogenase activity	6
GO:0004616	phosphogluconate dehydrogenase (decarboxylating) activity	1
GO:0004617	phosphoglycerate dehydrogenase activity	10
GO:0004764	shikimate 3-dehydrogenase (NADP+) activity	16
GO:0008106	alcohol dehydrogenase (NADP+) activity	2
GO:0008442	3-hydroxyisobutyrate dehydrogenase activity	9
GO:0008677	2-dehydropantoate 2-reductase activity	6
GO:0008703	5-amino-6-(5-phosphoribosylamino)uracil reductase activity	5
GO:0008762	UDP-N-acetylmuramate dehydrogenase activity	206
GO:0010301	xanthoxin dehydrogenase activity	4
GO:0016618	hydroxypyruvate reductase activity	12
GO:0018454	acetoacetyl-CoA reductase activity	14
GO:0030060	L-malate dehydrogenase activity	5
GO:0030604	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	6
GO:0045551	cinnamyl-alcohol dehydrogenase activity	7
GO:0045552	dihydrokaempferol 4-reductase activity	8
GO:0046029	mannitol dehydrogenase activity	36
GO:0047012	sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity	2
GO:0047501	(+)-neomenthol dehydrogenase activity	10
GO:0047560	3-dehydrosphinganine reductase activity	6
GO:0050235	pyridoxal 4-dehydrogenase activity	3
GO:0050577	GDP-L-fucose synthase activity	2
GO:0052747	sinapyl alcohol dehydrogenase activity	3
GO:0070524	11-beta-hydroxysteroid dehydrogenase (NADP+) activity	2

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V