PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_3	2	CH_aly_226	21	74	0.000080689
Arabidopsis lyrata	scaffold_3	3	CH_aly_266	21	74	0.0000867253
Capsella rubella	scaffold_2	5	CH_cru_70	10	14	0.00011007
Capsella rubella	scaffold_2	6	CH_cru_91	10	14	0.000111164
Eucalyptus grandis	scaffold_10	2	CH_egr_719	9	15	0.000305542
Eucalyptus grandis	scaffold_10	3	CH_egr_801	9	15	0.000311686
Eucalyptus grandis	scaffold_2	5	CH_egr_161	31	129	0.0000000122591
Eucalyptus grandis	scaffold_2	6	CH_egr_191	31	129	0.0000000130131
Eucalyptus grandis	scaffold_6	6	CH_egr_297	10	19	0.000254032
Medicago truncatula	chr2	2	CH_mtr_45	25	64	2.61493e-17
Medicago truncatula	chr2	3	CH_mtr_63	25	64	2.93185e-17
Medicago truncatula	chr1	5	CH_mtr_195	30	296	0.000247911
Medicago truncatula	chr2	5	CH_mtr_38	25	64	2.61493e-17
Medicago truncatula	chr1	6	CH_mtr_243	30	296	0.000276071
Medicago truncatula	chr2	6	CH_mtr_56	25	64	2.93185e-17
Solanum lycopersicum	ch02	2	CH_sly_138	21	64	0.0000000262862
Solanum lycopersicum	ch02	3	CH_sly_187	21	64	0.0000000285027
Solanum lycopersicum	ch02	5	CH_sly_58	21	64	0.0000000262862
Solanum tuberosum	chr12	3	CH_stu_595	19	78	0.000135077
Solanum tuberosum	chr01	5	CH_stu_145	36	243	0.0000680108
Solanum tuberosum	chr01	6	CH_stu_190	36	243	0.0000782251
Solanum tuberosum	chr12	6	CH_stu_212	30	190	0.000374275

GO term	Description	Number of clusters
GO:0009316	3-isopropylmalate dehydratase complex	1
GO:0022626	cytosolic ribosome	2
GO:0022627	cytosolic small ribosomal subunit	11
GO:0031083	BLOC-1 complex	1

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V