PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0005199
Description: structural constituent of cell wall

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	4	2	CH_ath_205	4	9	0.00000415773
Arabidopsis thaliana	4	3	CH_ath_240	4	9	0.000010768
Capsella rubella	scaffold_7	1	CH_cru_55	4	5	0.0000000014004
Capsella rubella	scaffold_7	2	CH_cru_89	4	5	0.00000000667441
Capsella rubella	scaffold_7	3	CH_cru_117	4	5	0.0000000322993
Citrullus lanatus	Chr9	2	CH_cla_168	3	21	0.000144254
Fragaria vesca	LG4	1	CH_fve_111	3	8	0.00000120442
Fragaria vesca	LG4	2	CH_fve_135	3	8	0.00000301072
Fragaria vesca	LG4	3	CH_fve_280	3	8	0.0000661839
Fragaria vesca	LG5	3	CH_fve_340	3	11	0.00019487
Fragaria vesca	LG4	7	CH_fve_1	3	8	0.000000365181
Fragaria vesca	LG4	8	CH_fve_1	3	8	0.00000146054
Fragaria vesca	LG4	9	CH_fve_2	3	8	0.0000306525
Glycine max	Gm11	3	CH_gma_346	3	5	0.0000415379
Glycine max	Gm11	9	CH_gma_3	3	5	0.000019542
Gossypium raimondii	Chr05	2	CH_gra_148	3	4	0.00000143856
Gossypium raimondii	Chr05	3	CH_gra_119	4	4	0.00000000334731
Malus domestica	8	3	CH_mdo_167	3	8	0.0000150243
Medicago truncatula	chr1	1	CH_mtr_337	3	5	0.00000642166
Medicago truncatula	chr4	1	CH_mtr_70	6	18	0.0000000000000567292
Medicago truncatula	chr6	1	CH_mtr_411	3	10	0.0000770009
Medicago truncatula	chr1	2	CH_mtr_451	3	5	0.0000324537
Medicago truncatula	chr4	2	CH_mtr_316	4	12	0.000000541247
Medicago truncatula	chr4	2	CH_mtr_107	6	18	0.00000000000200417
Medicago truncatula	chr6	2	CH_mtr_160	5	12	0.000000000279052
Medicago truncatula	chr1	3	CH_mtr_712	3	5	0.000243922
Medicago truncatula	chr3	3	CH_mtr_428	4	9	0.00000211793
Medicago truncatula	chr4	3	CH_mtr_297	5	16	0.0000000493864
Medicago truncatula	chr4	3	CH_mtr_110	7	18	0.00000000000015292
Medicago truncatula	chr6	3	CH_mtr_263	5	12	0.00000000897495
Populus trichocarpa	Chr01	3	CH_ptr_182	4	5	0.00000000566832
Solanum lycopersicum	ch02	1	CH_sly_387	3	7	0.000396696
Solanum lycopersicum	ch03	1	CH_sly_65	6	9	0.000000000000207842
Solanum lycopersicum	ch02	2	CH_sly_175	4	7	0.000000296018
Solanum lycopersicum	ch03	2	CH_sly_68	6	9	0.000000000000270175
Solanum lycopersicum	ch01	3	CH_sly_645	3	5	0.000907889
Solanum lycopersicum	ch01	3	CH_sly_125	5	5	0.000000000154996
Solanum lycopersicum	ch02	3	CH_sly_98	6	7	0.00000000000136815
Solanum lycopersicum	ch03	3	CH_sly_106	6	9	0.0000000000163822
Solanum lycopersicum	ch04	3	CH_sly_554	3	4	0.000363526
Solanum tuberosum	chr02	1	CH_stu_176	4	7	0.00000000406711
Solanum tuberosum	chr02	2	CH_stu_119	5	7	0.00000000000131014
Solanum tuberosum	chr01	3	CH_stu_706	3	7	0.000390605
Solanum tuberosum	chr02	3	CH_stu_210	5	7	0.0000000000878345
Solanum tuberosum	chr12	3	CH_stu_389	4	9	0.000000880186
Theobroma cacao	scaffold_9	1	CH_tca_187	3	10	0.0000083604
Theobroma cacao	scaffold_9	2	CH_tca_220	3	10	0.0000292509
Theobroma cacao	scaffold_9	3	CH_tca_369	3	10	0.000238765

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V