PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00057	2	CH_atr_59	3	3	0.00000000937035
Amborella trichopoda	scaffold00057	3	CH_atr_94	3	3	0.00000000937035
Eucalyptus grandis	scaffold_8	1	CH_egr_608	2	2	0.000584266
Fragaria vesca	LG6	3	CH_fve_231	3	11	0.0000177346
Manihot esculenta	scaffold03614	1	CH_mes_56	3	4	0.000000540467
Manihot esculenta	scaffold03614	2	CH_mes_64	3	4	0.000000540467
Manihot esculenta	scaffold03614	3	CH_mes_100	3	4	0.00000108089
Manihot esculenta	scaffold11998	9	CH_mes_5	2	2	0.000311883
Oryza sativa ssp. japonica	1	3	CH_osa_127	3	3	0.00000000763928
Ricinus communis	30128	1	CH_rco_71	3	3	0.00000014465
Ricinus communis	30128	2	CH_rco_77	3	3	0.00000014465
Ricinus communis	30128	3	CH_rco_50	4	4	0.0000000000426172
Theobroma cacao	scaffold_5	3	CH_tca_191	3	5	0.000000696997
Vitis vinifera	chr14	1	CH_vvi_116	3	3	0.0000000339411
Vitis vinifera	chr14	2	CH_vvi_124	3	3	0.0000000339411
Vitis vinifera	chr14	3	CH_vvi_156	3	3	0.0000000339411

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V