PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Capsella rubella	scaffold_1	1	CH_cru_154	6	59	0.0000554688
Capsella rubella	scaffold_1	2	CH_cru_250	6	59	0.000195459
Capsella rubella	scaffold_1	3	CH_cru_313	6	59	0.000235334
Chlamydomonas reinhardtii	chromosome_2	3	CH_cre_63	3	4	0.0000871108
Glycine max	Gm04	1	CH_gma_361	5	19	0.000748451
Glycine max	Gm04	2	CH_gma_239	6	19	0.0000116608
Glycine max	Gm04	3	CH_gma_127	8	19	0.00000000424138
Glycine max	Gm20	3	CH_gma_159	6	8	0.0000000518039
Glycine max	Gm15	6	CH_gma_86	13	230	0.0000595971
Medicago truncatula	chr1	1	CH_mtr_220	5	6	0.0000000757758
Medicago truncatula	chr1	2	CH_mtr_261	5	6	0.000000100831
Medicago truncatula	chr1	3	CH_mtr_406	5	6	0.0000011631
Medicago truncatula	scaffold0003	3	CH_mtr_471	6	16	0.00000733576
Solanum lycopersicum	ch10	3	CH_sly_63	9	13	5.95414e-16
Solanum lycopersicum	ch10	3	CH_sly_330	5	12	0.00000810381
Solanum lycopersicum	ch10	6	CH_sly_62	14	192	0.0000000000668656

GO term	Description	Number of clusters
GO:0043247	telomere maintenance in response to DNA damage	8

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V