PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Motif_579
Name: WRECSAA01
Description: Wound-responsive element (WRE) found in the promoter region of cucumber ascorbate oxidase gene, CsAAO1; Binding site of proteins in tobacco nuclear extracts

Sequence: AAWGTATCSA
Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Motif_561	GATA-2; GATA-4; GATA-3; GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	66.34%
Motif_540	CCA1 motif1 BS in CAB1	A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene	66.34%
Motif_341	NAM	Molecular characterization of AtNAM: a member of the Arabidopsis NAC domain superfamily	66.34%
Motif_408	EVENINGAT	Evening element found 46 times in the promoters of 31 cycling genes in Arabidopsis thaliana; Required for circadian control of gene expression; EE (evening element) motif; Also found in the promoter of the Solanum melongena gene encoding cysteine protease, and identified as cis-element for its circadian regulation;Orchestrated transcription of key pathways in Arabidopsis by the circadian clock	66.34%
Matrix_383	CCA1	Not Available	66.03%
Matrix_160	RVE1	Not Available	65.45%
Matrix_157	LHY; RVE2	Not Available	63.93%
Matrix_324	AT2G01060	Not Available	61.58%
Matrix_114	EPR1; AT3G10113	Not Available	61.56%
Motif_616	BZIP12; ABI5	The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis	61.34%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	61.14%
Matrix_522	GATA11; GATA13	Not Available	61.05%
Matrix_361	AT1G25550	Not Available	60.74%
Matrix_210	ARR1	Not Available	60.50%
Motif_246	LBOXLERBCS	L box; Conserved sequence found in rbcS upstream sequences of both tomato and tobacco	60.00%
Motif_345	GT-1	Molecular dissection of GT-1 from Arabidopsis	60.00%
Matrix_16	AT3G04450; PHL1	Not Available	59.94%
Matrix_76	GATA10	Not Available	59.84%
Matrix_4	ARR14	Not Available	59.55%
Matrix_69	AT2G03500	Not Available	59.50%
Matrix_491	AT1G68670; AT3G25790	Not Available	59.39%
Matrix_9	AT5G04760	Not Available	59.13%
Matrix_162	AtPHR1	Not Available	58.54%
Matrix_318	ATHB16	Not Available	58.53%
Matrix_336	AT5G08520	Not Available	57.80%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	57.70%
Matrix_38	SPL14	Not Available	57.16%
Motif_167	SBP-box promoter motif	Molecular characterisation of the Arabidopsis SBP-box genes	56.56%
Motif_121	WRKY43; WRKY38; WRKY26	Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense;Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	56.34%
Motif_43	CCA1 binding site motif	CCA1 binding site; CCA1 protein (myb-related transcription factor) interact with two imperfect repeats of AAMAATCT in Lhcb1*3 gene of Arabidopsis thaliana; Related to regulation by phytochrome;A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene	56.34%
Motif_363	WRKY26	Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	56.34%
Motif_238	AtWER	Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in Arabidopsis	56.34%
Motif_297	Bellringer/replumless/pennywise BS1 IN AG	Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems	56.34%
Motif_322	GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	56.34%
Motif_257	BOX1PSGS2	Box 1 element in pea glutamine synthetase (GS2) gene; An element in a 33-bp AT-rich sequence (box 1) of the 5' end of a GS2 promoter; Located at -837 to -827 of pea GS2; Multimer of box 1 element was used to isolate a cDNA encoding an AT-rich DNA binding protein (ATBP-1)	56.34%
Motif_624	ATHB6 binding site motif	Consensus binding sequence for Arabidopsis homeodomain-leucine zipper protein, ATHB6; ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses; Homeodomain protein ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses in Arabidopsis	56.34%
Motif_58	LREBOXIPCCHS1	BoxI; Light responsive element (LRE) found in the parsley CHS-1 (chalcone synthase-1) gene promoter; Required for light responsiveness; nuclear protein binding site; MRECHS (MRE=Myb Recognition Element)Recognition site of MYB305 and a novel factor PcMYB1 (Myb1 from P. crispum); PcMYB1 contains only one MYB repeat	56.34%
Motif_500	D1GMAUX28	D1; DNase I protected sequence found in the soybean auxin responsive gene, Aux28, promoter; D1 and D4 share a very similar core sequence TAGTXXCTGT and TAGTXCTGT, respectively; D1/D4-like sequence were identified in several other auxin-responsive genes; Binding site of GmGT-2 which is the GT-2 family of transcription factors; GmGT-2 are down-regulated by light in a phytochrome-dependent manner	56.34%
Motif_468	WRKY43; WRKY38; WRKY26	Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense. Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	56.34%
Motif_475	GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	56.34%
Motif_570	POLASIG2	PolyA signal; poly A signal found in rice alpha-amylase; -10 to -30 in the case of animal genes	56.34%
Motif_427	LS7ATPR1	LS7; A positive salicylic acid-inducible element found in the Arabidopsis PR-1 gene promoter; Binding site of TGA1; NPR1 increased the binding of TGA2 to the element; NPR1 is essential in activating systemic, inducible plant defense responses; TGA6 expressed in roots in young seedlings; TGA2.1 is a direct transcriptional activator; TGA2.2 stabilizes TGA2.1 binding; The Arabidopsis NPR1/NIM1 protein enhances the DNA binding activity of a subgroup of the TGA family of bZIP transcription factors	56.34%
Matrix_6	AT1G70000	Not Available	55.86%
Motif_429	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	55.00%
Motif_222	AGMOTIFNTMYB2	AG-motif found at -114 of the promoter of NtMyb2 gene; NtMyb2 is a regulator of the tobacco retrotransposon Tto1 and the defence-related gene phenylalanine ammonia lyase (PAL), which are induced by various stress such as wounding or elicitor treatment; AGP1 (GATA-type zinc finger protein) binding site	55.00%
Motif_308	SP8BFIBSP8AIB	One of SPBF binding site (SP8a); Found at -155 of gSPO-A1 (sporamin) gene, and also at -880 of gB-Amy (beta-amylase) gene in sweet potato; SP8BF recognizes both SP8a and SP8b sequences; See also SP8BFIBSP8BIB; SP8BF activity is also found in tobacco; SP8a found in the 5' upstream region of three differnt genes coding for sporamin and beta-amylase; Binding site of SPF1; SPF1 also binds to the SP8b	55.00%
Motif_155	NODCON1GM	One of two putative nodulin consensus sequences; See also NODCON2GM; One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodules	55.00%
Motif_628	TATCCAOSAMY	TATCCA element found in alpha-amylase promoters of rice at positions ca.90 to 150bp upstream of the transcription start sites; Binding sites of OsMYBS1, OsMYBS2 and OsMYBS3 which mediate sugar and hormone regulation of alpha-amylase gene expression; See also AMYBOX2	55.00%
Motif_18	5659BOXLELAT5659	56/59 box; A sequence motif shared between the tomato LAT(Late Anther Tomato)56 and LAT59 promoters; Found in -103 to -94 in LAT56 and in -114 to -105 in LAT59; Involved in modulating the activity of the LAT gene promoters in pollen	55.00%
Motif_71	WRKY63	ABO3, a WRKY transcription factor, mediates plant responses to abscisic acid and drought tolerance in Arabidopsis	55.00%
Matrix_423	AT3G04030	Not Available	54.98%
Matrix_327	ARR11	Not Available	54.14%
Matrix_236	CCA1	Not Available	53.99%
Matrix_62	HAT5	Not Available	53.79%
Matrix_97	APRR2	Not Available	53.57%
Matrix_357	WRKY61; WRKY6; WRKY9; WRKY36; WRKY47; WRKY42; WRKY31; WRKY72	Not Available	53.55%
Matrix_182	ATHB6	Not Available	53.51%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	53.03%
Matrix_471	KAN4	Not Available	52.87%
Motif_592	WRKY43; WRKY38; WRKY26	Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense. Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	52.68%
Motif_253	S1FSORPL21	S1F binding site (S1 site) in spinach (S.o.) RPL21 gene encoding the plastid ribosomal protein L21; Negative element; Might play a role in downregulating RPL21 promoter activity	52.68%
Matrix_421	GLK1	Not Available	52.55%
Matrix_152	EIL1; AT5G65100	Not Available	52.47%
Matrix_258	WOX13	Not Available	52.37%
Matrix_199	AT1G69170; SPL9; SPL15; SPL13A; SPL13B	Not Available	52.21%
Matrix_444	AT1G19485; AT4G17950	Not Available	52.07%
Matrix_237	MYB55	Not Available	51.96%
Matrix_218	TIFY2B; TIFY1	Not Available	51.94%
Matrix_89	SOC1	Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis	51.69%
Matrix_328	AT1G76580	Not Available	51.67%
Matrix_447	RVE1	Not Available	51.67%
Matrix_87	AT1G19000	Not Available	51.52%
Matrix_435	ATHB51	Not Available	51.51%
Matrix_276	AT1G01520; AT3G09600; AT4G01280; LCL1; AT5G52660	Not Available	51.51%
Motif_464	ARR1; ARR2	Arabidopsis ARR1 and ARR2 response regulators operate as transcriptional activators	51.46%
Matrix_457	TGA2	Not Available	51.41%
Motif_153	MARABOX1	A-box found in SAR(scaffold attachment region; or matrix attachment region, MAR)	51.34%
Motif_582	ARR1; ARR2	Arabidopsis ARR1 and ARR2 response regulators operate as transcriptional activators	51.34%
Motif_375	ERELEE4	ERE (ethylene responsive element) of tomato E4 and carnation GST1 genes; GST1 is related to senescence; Found in the 5'-LTR region of TLC1.1 retrotransposon family in Lycopersicon chilense; ERE motifs mediate ethylene-induced activation of the U3 promoter region	51.34%
Motif_195	TATABOX4	TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation	51.34%
Motif_483	ABREMOTIFAOSOSEM	motif A ABRE-like sequence found in rice Osem gene promoter; Essential for activation by VP1; Important for regulation by ABA;TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption;ABRE motif A found in the promoter of the rice Osem gene; ACGT-containing ABRE; Required for ABA-responsiveness and VP1 activation; Binding site of TRAB1; Motif A and CE3 are functionally equivalent; TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption	51.34%
Motif_54	LTREATLTI78	Putative low temperature responsive element (LTRE); Found in Arabidopsis thaliana low-temperature-induced (lti) genes, lti78 and lti65; Repeated four times in lti78 which is also known as cor78 and rd29A; Found also in barley low temperature responsive genes, blt4.2, blt4.6, blt4.9 (lipid transfer genes); cold inducible; See LTRECORE; Also present in rab18, kin1, and kin2; Differential expression of two related, low-temperature-induced genes in Arabidopsis thaliana	51.34%
Motif_342	POLASIG1	PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in Arabidopsis	51.34%
Motif_150	RBCSCONSENSUS	rbcS general consensus sequence; AATCCAA or AATCCAAC	51.34%
Motif_556	INTRONUPPER	5' exon-intron splice junctions of plant introns; Plant intron upper sequence; Consensus sequence for plant introns	51.34%
Motif_260	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	51.34%
Motif_516	BZIP12; ABI5	The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis	51.34%
Motif_641	LRENPCABE	LRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241	51.34%
Motif_626	ACGTTBOX	T-box according to the nomenclature of ACGT elements; One of ACGT elements; See also ACGTABOX,ACGTCBOX, and CACGTGMOTIF	51.34%
Motif_453	HEXMOTIFTAH3H4	hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding site	51.34%
Motif_72	GADOWNAT	Sequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABRE	51.34%
Motif_469	QELEMENTZMZM13	Q(quantitative)-element in maize ZM13 gene promoter; Found at -107 to -102; Involved in expression enhancing activity; ZM13 is a maize homolog of tomato LAT52 gene; ZM13 is a pollen-specific maize gene	51.34%
Motif_349	QARBNEXTA	QAR (quantitative activator region) in promoter region of Brassica napus extA extensin gene	51.34%
Matrix_8	KAN1	Not Available	51.20%
Matrix_279	HRS1	Not Available	51.07%
Matrix_103	ATHB1	The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	50.98%
Matrix_161	MYBC1; AT3G10760; LUX; AT5G05090; AT5G59570	Not Available	50.82%
Matrix_489	RAV1	Not Available	50.40%
Matrix_402	TOE1	Not Available	50.34%
Matrix_425	TIFY2A	Not Available	50.31%
Matrix_125	AHL12	Not Available	50.27%
Matrix_366	ARR14	Not Available	50.13%
Matrix_303	ATWOX13	Not Available	50.12%
Matrix_106	AT5G47390	Not Available	50.01%
Motif_381	GATA-2; GATA-4; GATA-3; GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	50.00%
Motif_580	L1BOXATPDF1	L1 box found in promoter of Arabidopsis thaliana PROTODERMAL FACTOR1 (PDF1) gene; Located between -134 and -127; Involved in L1 layer-specific expression; L1-specific homeodomain protein ATML can bind to the L1 box; Y=C/T; A cotton fiber gene, RD22-like 1 (RDL1), contains a homeodomain binding L1 box and a MYB binding motif ; HDZip IV; Identification of a cis-regulatory element for L1 layer-specific gene expression, which is targeted by an L1-specific homeodomain protein	50.00%
Motif_337	WRKY11	Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	50.00%
Motif_618	MYB1AT	MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis	50.00%
Motif_248	L1-box	Arabidopsis DELLA and two HD-ZIP transcription factors regulate GA signaling in the epidermis through the L1 box cis-element	50.00%
Motif_386	WRKY11	Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	50.00%
Motif_610	GATA-2; GATA-4; GATA-3; GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	50.00%
Motif_436	WRKY18	Identification of genes encoding receptor-like protein kinases as possible targets of pathogen- and salicylic acid-induced WRKY DNA-binding proteins in Arabidopsis	50.00%
Motif_174	SREATMSD	sugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in Arabidopsis	50.00%
Motif_673	Bellringer/replumless/pennywise BS2 IN AG	Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems	50.00%
Motif_424	GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	50.00%
Motif_263	RYREPEATVFLEB4; ABI3	RY repeat motif; quantitative seed expression; Gene: Vicia faba LeB4; Soybean glycinin (Gy2); other dicot and monocot seed protein genes; Sph box found in rice Osem gene promoter; Binding site of Arabidopsis B3-domain-containing transcription factor FUS3; TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption; FUS3 protein physically interact with two RY elements present in the AtGA3ox promoter;RY repeats are conserved in the 5 prime-flanking region of legume seed protein genes. Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	50.00%
Motif_52	GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	50.00%
Motif_11	L4DCPAL1	L4 element, found in PAL1 promoter in carrot (Daucus carota), is a UV-B responsive element; L4 contains Box L-like sequence (TCCAACCA)	50.00%