At5g12840.2 68412.m08220 CCAAT box binding factor/ transcription factor Hap2a
Matching miRNAs:
| miRNA name | IGR name | mature miRNA sequence | Targets | Rfam | |
|---|---|---|---|---|---|
| 1 | prec1096 | igr1201#chr3#x1=4804107#l=2637_1618-1718 | AGCCAAGGATGACTTGCCGGT | 2 | |
| 2 | prec1109 | igr1201#chr3#x1=4804107#l=2637_1618-1718 | AGCCAAGGATGACTTGCCGG | 3 | |
| 3 | prec3121 | igr2011#chr4#x1=10447721#l=2403_320-398 | AGCCAAGGATGACTTGCCGG | 3 |
Gene Sequence:
ccaaaaucua ggguuuucuu cucgcccaau uucacuuuuc uucuacgaaa uucuccauuc 60 .......... .......... .......... .......... .......... .......... prec1096 .......... .......... .......... .......... .......... .......... prec1109 .......... .......... .......... .......... .......... .......... prec3121 cugccggcug ucggguuuuc ugaaucgauu cuccuucacc aacuucuucu cugguucugu 120 .......... .......... .......... .......... .......... .......... prec1096 .......... .......... .......... .......... .......... .......... prec1109 .......... .......... .......... .......... .......... .......... prec3121 ucgauucuga uuuuuuuuca aggucaauuu uuucuucucu uuaaacucug caaaaucgug 180 .......... .......... .......... .......... .......... .......... prec1096 .......... .......... .......... .......... .......... .......... prec1109 .......... .......... .......... .......... .......... .......... prec3121 aucgauuaaa uucaccucag gguuuuuuga uuucugaaag aaguuaaucu ucuucgaagg 240 .......... .......... .......... .......... .......... .......... prec1096 .......... .......... .......... .......... .......... .......... prec1109 .......... .......... .......... .......... .......... .......... prec3121 cgauugcaaa agagugcucu gcugugaauu uccacugagA UGCAAUCAAA ACCGGGAAGA 300 .......... .......... .......... .......... .......... .......... prec1096 .......... .......... .......... .......... .......... .......... prec1109 .......... .......... .......... .......... .......... .......... prec3121 GAAAACGAAG AGGAAGUCAA UAAUCACCAU GCUGUUCAGC AGCCGAUGAU GUAUGCAGAG 360 .......... .......... .......... .......... .......... .......... prec1096 .......... .......... .......... .......... .......... .......... prec1109 .......... .......... .......... .......... .......... .......... prec3121 CCCUGGUGGA AAAACAACUC CUUUGGUGUU GUACCUCAAG CGAGACCUUC UGGAAUUCCA 420 .......... .......... .......... .......... .......... .......... prec1096 .......... .......... .......... .......... .......... .......... prec1109 .......... .......... .......... .......... .......... .......... prec3121 UCAAAUUCCU CUUCUUUGGA UUGCCCCAAU GGUUCCGAGU CAAACGAUGU UCAUUCAGCA 480 .......... .......... .......... .......... .......... .......... prec1096 .......... .......... .......... .......... .......... .......... prec1109 .......... .......... .......... .......... .......... .......... prec3121 UCUGAAGACG GUGCGUUGAA UGGUGAAAAC GAUGGCACUU GGAAGGAUUC ACAAGCUGCA 540 .......... .......... .......... .......... .......... .......... prec1096 .......... .......... .......... .......... .......... .......... prec1109 .......... .......... .......... .......... .......... .......... prec3121 ACUUCCUCUC GUUCAGAUAA UCACGGAAUG GAAGGAAAUG ACCCAGCGCU CUCUAUCCGU 600 .......... .......... .......... .......... .......... .......... prec1096 .......... .......... .......... .......... .......... .......... prec1109 .......... .......... .......... .......... .......... .......... prec3121 AACAUGCAUG AUCAGCCACU UGUACAACCA CCAGAGCUUG UUGGACACUA UAUCGCUUGU 660 .......... .......... .......... .......... .......... .......... prec1096 .......... .......... .......... .......... .......... .......... prec1109 .......... .......... .......... .......... .......... .......... prec3121 GUCCCAAACC CAUAUCAGGA UCCAUAUUAU GGGGGAUUGA UGGGAGCAUA UGGUCAUCAG 720 .......... .......... .......... .......... .......... .......... prec1096 .......... .......... .......... .......... .......... .......... prec1109 .......... .......... .......... .......... .......... .......... prec3121 CAAUUGGGUU UUCGUCCAUA UCUUGGAAUG CCUCGUGAAA GAACAGCUCU GCCACUUGAC 780 .......... .......... .......... .......... .......... .......... prec1096 .......... .......... .......... .......... .......... .......... prec1109 .......... .......... .......... .......... .......... .......... prec3121 AUGGCACAAG AGCCCGUUUA UGUGAAUGCA AAGCAGUACG AGGGAAUUCU AAGGCGAAGA 840 .......... .......... .......... .......... .......... .......... prec1096 .......... .......... .......... .......... .......... .......... prec1109 .......... .......... .......... .......... .......... .......... prec3121 AAAGCACGUG CCAAGGCAGA GCUAGAGAGG AAAGUCAUCC GGGACAGAAA GCCAUAUCUU 900 .......... .......... .......... .......... .......... .......... prec1096 .......... .......... .......... .......... .......... .......... prec1109 .......... .......... .......... .......... .......... .......... prec3121 CACGAGUCAA GACACAAGCA UGCAAUGAGA AGGGCACGAG CGAGUGGAGG CCGGUUUGCG 960 .......... .......... .......... .......... .......... .......... prec1096 .......... .......... .......... .......... .......... .......... prec1109 .......... .......... .......... .......... .......... .......... prec3121 AAGAAAAGUG AGGUAGAAGC GGGAGAGGAU GCAGGAGGGA GAGACAGAGA AAGGGGUUCA 1020 .......... .......... .......... .......... .......... .......... prec1096 .......... .......... .......... .......... .......... .......... prec1109 .......... .......... .......... .......... .......... .......... prec3121 GCAACCAACU CAUCAGGCUC UGAACAAGUU GAGACAGACU CUAAUGAGAC CCUGAAUUCU 1080 .......... .......... .......... .......... .......... .......... prec1096 .......... .......... .......... .......... .......... .......... prec1109 .......... .......... .......... .......... .......... .......... prec3121 UCUGGUGCAC CAUAAuaaaa aaagccaaag cucugagagg agagagagac acacacuuug 1140 .......... .......... .......... .......... .......... .......... prec1096 .......... .......... .......... .......... .......... .......... prec1109 .......... .......... .......... .......... .......... .......... prec3121 gcuaauauaa ucauugccuc aaaccggcaa aucauucuug gcuuuuucgu uuuuguguuu 1200 .......... .......... ..******** ********** ***....... .......... prec1096 .......... .......... ...******* ********** ***....... .......... prec1109 .......... .......... ...******* ********** ***....... .......... prec3121 gcuaguuguu cuugucagag ucucauauug uguggguuua acaguuauga ugaauguaca 1260 .......... .......... .......... .......... .......... .......... prec1096 .......... .......... .......... .......... .......... .......... prec1109 .......... .......... .......... .......... .......... .......... prec3121 aagagcgagu uauguuaggu guuagauuuu ggagacaaga gacuaaggaa uagcaaguag 1320 .......... .......... .......... .......... .......... .......... prec1096 .......... .......... .......... .......... .......... .......... prec1109 .......... .......... .......... .......... .......... .......... prec3121 gucuuguuuu uauucuuuga ccuuuuuuuu cucuuuugca aaauugaaaa auacguuugc 1380 .......... .......... .......... .......... .......... .......... prec1096 .......... .......... .......... .......... .......... .......... prec1109 .......... .......... .......... .......... .......... .......... prec3121 uuaaucguuu gccuuucuga cc 1402 .......... .......... .. prec1096 .......... .......... .. prec1109 .......... .......... .. prec3121