| IGR sequence: | igr1201#chr3#x1=4804107#l=2637 |
|---|---|
| Mature miRNA sequence: | AGCCAAGGAUGACUUGCCGGU |
| encoded miRNA: | MIR77a |
| Precursor location: | 1618 - 1718 (negative strand) |
| precursor length: | 101 (37 basepairs) |
| MIR position: | 1 - 21 (1698 - 1718) |
| MIR length: | 21 (19 paired bases) |
| miRNA location TIGR v3: | chr3:4805724<4805824 |
| miRNA location TIGR v5: | chr3:4805724<4805824 |
| Folding energy: | -44.90 |
| BLAST hit against RFAM Atha miRNAs: | none |
| Belongs to miRNAs-targets cluster: | cluster006 |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
********** ********** *
AGCCAAGGAU GACUUGCCGG UUUAAACCCA ACCGGUUUAU GACCAUUGAU UUGGUCUCAU 60
((((((((-( (((((((((( ,,<<<<<<__ ___>>>>>>, <<<<<_____ _>>>>>,,,,
UCACAAUCUG UUGAUUCGUG UCUGGCAAGU UGACCUUGGC U 101
,<<<<<<<__ __>>>>->>> ,))))))))) ))-))))))) )
Postscript file CT file PNG file fasta file Stockholm file
Targets:
| Nr. | Gene | Description | mismatches | miRNAs |
|---|---|---|---|---|
| 1 | At5g12840.1 | 68412.m08219 CCAAT box binding factor/ transcription factor Hap2a | 2 | 2 |
| 2 | At5g12840.2 | 68412.m08220 CCAAT box binding factor/ transcription factor Hap2a | 2 | 2 |
Rice homologs
- gnl|BL_ORD_ID|3091_167854+167959_86-106
- gnl|BL_ORD_ID|3091_167854-167959_1-21
- gnl|BL_ORD_ID|1181_130579-130684_1-21
- gnl|BL_ORD_ID|1181_130579+130684_86-106