At3g26810.1 68410.m03071 transport inhibitor response 1 (TIR1), putative
Matching miRNAs:
| miRNA name | IGR name | mature miRNA sequence | Targets | Rfam | |
|---|---|---|---|---|---|
| 1 | prec10738 | igr3494#chr2#x1=16598245#l=6010_2332+2444 | TCCAAAGGGATCGCATTGATC | 2 | |
| 2 | prec15007 | igr4444#chr3#x1=20692045#l=9635_7607+7748 | ATCCAAAGGGATCGCATTGATCCT | 4 | |
| 3 | prec15019 | igr4444#chr3#x1=20692045#l=9635_7608+7747 | TCCAAAGGGATCGCATTGATC | 2 |
Gene Sequence:
agaagaaaga gaauagagag agagagagag uuuuguucuu cuucuuucug guuccuuugc 60 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 uuugcuuugg uugcgugauc uccucucuca ucaaucuucu ucaucaucau ucucaucauc 120 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 auuagcuucu ugauuuuuuu uuccuucuuu uuuucguuuc aagaaacuaa acaaaguuuc 180 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 uauuuauggu uuucugauuc uucuucuaca gaucuauuau uugauucucc uucgaucauu 240 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 gucaacguuu ucuucuuuug uaaucaucac aguuuuuuuu gagaauuugu ucauuuuuuu 300 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 uucucauaua uugauucgag uucuuucuuc uugaaucuug uucuucauag aucuaguuuu 360 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 uguuuuuuac ucucuagauc uauagaucug uugaauucac uucuuuaauc caucucugug 420 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 uucuugaguu ccuauggucu aagucaaacu caaguucaag aucuguugaa uuuggaaucu 480 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 ugcuggugaa guuagagAUG AAUUAUUUCC CAGAUGAAGU AAUAGAGCAU GUAUUCGACU 540 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 UUGUAACAUC UCACAAAGAC AGGAAUGCUA UAUCUCUUGU AUGCAAAUCA UGGUACAAGA 600 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 UUGAAAGAUA CAGUAGGCAA AAGGUUUUCA UUGGAAACUG UUAUGCCAUU AAUCCAGAGA 660 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 GGUUGCUUCG GAGAUUCCCA UGUCUAAAGU CUUUGACUUU GAAAGGAAAA CCUCAUUUUG 720 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 CGGAUUUCAA UUUGGUUCCU CAUGAAUGGG GAGGUUUUGU GCUACCUUGG AUUGAGGCUU 780 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 UGGCUAGAAG CCGUGUAGGA CUUGAAGAGC UUAGGUUGAA GAGGAUGGUU GUUACUGAUG 840 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 AGAGUCUUGA GCUGCUUUCU CGUUCUUUUG UCAAUUUUAA GUCUUUGGUC CUUGUUAGCU 900 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 GUGAAGGUUU UACCACUGAU GGUCUUGCCU CUAUUGCCGC UAAUUGCAGG CAUCUUCGGG 960 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 AUCUUGAUUU GCAAGAGAAU GAAAUCGAUG AUCAUAGAGG UCAAUGGUUA AGUUGUUUCC 1020 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 CAGACACUUG CACGACUCUU GUCACGCUAA ACUUUGCGUG CCUCGAAGGA GAAACUAAUC 1080 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 UGGUUGCUCU AGAGAGGCUU GUUGCUAGGU CUCCAAACCU AAAGAGUCUG AAGCUAAAUC 1140 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 GUGCAGUACC GUUAGAUGCA CUCGCAAGGU UAAUGGCGUG UGCGCCGCAG AUAGUUGACU 1200 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 UAGGAGUAGG GUCUUAUGAG AAUGACCCAG AUUCCGAGUC UUACUUGAAA CUCAUGGCUG 1260 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 UCAUAAAGAA AUGCACCUCG UUGAGGAGUU UGUCGGGUUU UCUAGAGGCU GCUCCUCACU 1320 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 GUCUCUCAGC UUUCCACCCA AUAUGUCAUA ACCUCACCUC CUUGAAUCUU AGUUACGCAG 1380 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 CUGAGAUUCA UGGUAGCCAC CUUAUUAAGC UUAUUCAGCA UUGCAAGAAA CUUCAGCGGU 1440 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 UAUGGAUUUU GGAUAGUAUA GGUGACAAAG GGCUUGAAGU UGUAGCUUCU ACAUGUAAAG 1500 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 AGUUACAAGA GCUUAGGGUU UUUCCAUCUG AUUUACUCGG UGGAGGCAAC ACAGCUGUGA 1560 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 CCGAAGAAGG UCUAGUUGCC AUCUCGGCAG GCUGCCCUAA GCUCCACUCU AUACUCUACU 1620 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 UCUGCCAACA AAUGACAAAC GCAGCUCUCG UAACCGUUGC CAAGAACUGU CCAAAUUUCA 1680 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 UCCGUUUCCG ACUCUGCAUC CUCGAGCCAA ACAAACCCGA UCACGUCACA UCUCAACCUC 1740 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 UAGACGAAGG CUUUGGAGCA AUCGUCAAAG CCUGCAAGAG CCUGAGAAGG CUUUCUCUCU 1800 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 CAGGUCUCCU UACAGACCAA GUCUUCCUCU ACAUCGGAAU GUACGCGAAU CAGCUCGAGA 1860 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 UGCUCUCCAU AGCCUUUGCA GGAGAUACAG ACAAAGGCAU GCUAUAUGUG UUGAAUGGUU 1920 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 GCAAAAAGAU GAAGAAACUA GAGAUAAGGG AUAGUCCGUU UGGGGACACG GCGCUUCUUG 1980 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 CUGAUGUGAG CAAGUAUGAA ACAAUGCGAU CCCUUUGGAU GUCUUCAUGU GAAGUCACAC 2040 .......... ........** ********** *********. .......... .......... prec10738 .......... ......**** ********** ********** .......... .......... prec15007 .......... ........** ********** *********. .......... .......... prec15019 UCAGUGGAUG CAAAAGGCUC GCAGAGAAAG CGCCAUGGCU CAAUGUAGAG AUCAUAAACG 2100 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 AGAAUGAUAA UAACCGGAUG GAAGAAAACG GACACGAGGG GAGGCAGAAA GUGGAUAAGU 2160 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 UGUAUCUGUA CCGGACUGUG GUUGGGACAA GAAUGGAUGC GCCGCCAUUU GUGUGGAUUC 2220 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 UCUAAguccu uuucagacca aacugguucu gauuggucgu cuuccguuag ugugucuuuc 2280 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 ccgaauuagg uguacuuuuu guuuucuuua aauuaagaca agaacugauu cuucugugaa 2340 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 agccauucug uuuuuguuuu ugacuuuccu ccguugauuu auugguuucu uuuuucaagu 2400 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 u 2401 . prec10738 . prec15007 . prec15019