At1g12820.1 68408.m01345 transport inhibitor response 1 (TIR1), putative
Matching miRNAs:
| miRNA name | IGR name | mature miRNA sequence | Targets | Rfam | |
|---|---|---|---|---|---|
| 1 | prec10738 | igr3494#chr2#x1=16598245#l=6010_2332+2444 | TCCAAAGGGATCGCATTGATC | 2 | |
| 2 | prec15007 | igr4444#chr3#x1=20692045#l=9635_7607+7748 | ATCCAAAGGGATCGCATTGATCCT | 4 | |
| 3 | prec15019 | igr4444#chr3#x1=20692045#l=9635_7608+7747 | TCCAAAGGGATCGCATTGATC | 2 |
Gene Sequence:
auuacagagu uucugguuuu uuuuggcuug cgugaucucu cucuucucuu cucucucuca 60 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 cucauccaaa ucuuugauca ucucaucauc auuggacuug aagcuaacuc cagaguuuua 120 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 uccagauuca ucauuuucca acguuuuucu ucaaucgaau caucagcgag uuugguuccg 180 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 acgacgaucu uaguagcuuc auaagcucaa gauucuucag guuucggugg auuuucuuga 240 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 gcucuucuaa gcuucuccau uuugugagcc uccgauuucg aaccugguag uguuguggau 300 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 cucacuggac cacgaagcuu ucuucacuga gcuaagcuug aagucaauuc cucuguucga 360 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 caaucaauag aggaagAUGA AUUAUUUCCC AGACGAGGUU AUAGAGCACG UGUUUGACUU 420 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 CGUAGCUUCU CACAAAGACA GGAACUCGAU AUCUCUGGUC UGCAAAUCAU GGCACAAGAU 480 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 CGAGAGGUUU AGUAGGAAGG AAGUGUUCAU CGGAAACUGC UACGCGAUUA ACCCGGAGAG 540 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 GUUGAUCAGG AGGUUUCCAU GUCUCAAAUC CUUAACUUUA AAAGGGAAGC CUCAUUUUGC 600 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 AGACUUCAAC UUGGUUCCUC AUGAAUGGGG AGGUUUCGUG CAUCCUUGGA UUGAAGCUUU 660 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 GGCUAGAAGC CGUGUGGGAC UUGAGGAGCU GAGGUUGAAG CGGAUGGUUG UAACAGAUGA 720 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 AAGCUUGGAC CUUCUUUCAC GUUCUUUUGC AAAUUUCAAG UCUUUGGUUC UUGUUAGCUG 780 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 UGAAGGGUUU ACCACUGAUG GCUUAGCUUC CAUUGCCGCU AAUUGCAGGC AUCUUCGUGA 840 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 GCUGGACUUG CAAGAGAAUG AGAUUGAUGA UCAUAGAGGU CAAUGGCUGA ACUGUUUUCC 900 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 AGAUAGCUGC ACUACUCUUA UGUCGUUGAA UUUCGCUUGC CUUAAAGGAG AGACCAAUGU 960 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 UGCUGCUUUA GAAAGGCUUG UUGCUAGGUC ACCAAACCUG AAGAGCUUGA AGUUAAACCG 1020 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 UGCAGUACCG CUUGACGCAC UCGCAAGGUU AAUGAGUUGU GCGCCGCAGC UAGUGGACUU 1080 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 AGGAGUAGGG UCUUAUGAGA AUGAGCCAGA UCCUGAAUCU UUUGCAAAAC UCAUGACUGC 1140 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 CAUUAAGAAA UACACAUCGU UAAGGAGCUU GUCUGGCUUU UUAGAGGUUG CUCCACUCUG 1200 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 CCUCCCAGCG UUCUACCCAA UUUGCCAAAA CCUUAUCUCU UUGAACCUCA GCUAUGCAGC 1260 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 UGAAAUCCAA GGCAACCACC UCAUUAAGCU UAUUCAGCUU UGCAAGAGAC UUCAACGAUU 1320 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 AUGGAUAUUG GAUAGUAUUG GUGACAAAGG ACUUGCGGUU GUCGCUGCCA CAUGUAAAGA 1380 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 GUUACAAGAG CUUAGAGUUU UUCCCUCUGA UGUACAUGGU GAAGAAGAUA ACAACGCAUC 1440 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 UGUGACUGAG GUUGGACUAG UCGCCAUUUC CGCAGGUUGC CCUAAACUUC AUUCGAUUCU 1500 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 GUACUUCUGC AAACAGAUGA CAAACGCAGC GCUCAUAGCC GUGGCCAAAA ACUGUCCAAA 1560 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 CUUCAUCCGG UUCAGGCUAU GCAUUCUCGA GCCACACAAA CCUGACCACA UUACAUUUCA 1620 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 AUCACUGGAC GAGGGCUUUG GUGCAAUCGU ACAAGCUUGC AAGGGUCUAA GACGGCUCUC 1680 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 UGUCUCCGGU CUCUUAACCG AUCAAGUCUU UCUCUACAUC GGUAUGUACG CGGAACAGCU 1740 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 CGAGAUGCUU UCGAUAGCUU UUGCGGGGGA CACUGACAAA GGAAUGCUCU AUGUGUUGAA 1800 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 UGGAUGCAAA AAAAUGAGGA AGCUGGAGAU AAGGGACAGU CCUUUUGGGA ACGCUGCGCU 1860 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 UCUUGCUGAC GUGGGUAGGU ACGAAACAAU GCGAUCCCUU UGGAUGUCGU CUUGUGAAGU 1920 .......... .......... ...******* ********** ****...... .......... prec10738 .......... .......... .********* ********** *****..... .......... prec15007 .......... .......... ...******* ********** ****...... .......... prec15019 AACACUCGGU GGCUGCAAGA GGCUCGCGCA GAAUUCGCCA CGGCUUAACG UAGAGAUCAU 1980 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 CAACGAGAAU GAGAAUAAUG GGAUGGAACA GAAUGAAGAA GAUGAAAGAG AGAAGGUUGA 2040 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 UAAACUUUAC CUCUACCGAA CAGUGGUUGG GACUAGAAAA GAUGCACCAC CAUAUGUUAG 2100 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 GAUUCUUUAG ucucuuugca ccuucaugug uuuucaaacu uuucuuugua cuaguuuuug 2160 .......... .......... .......... .......... .......... .......... prec10738 .......... .......... .......... .......... .......... .......... prec15007 .......... .......... .......... .......... .......... .......... prec15019 ccuuuuauca aacuuggaac aaauac 2186 .......... .......... ...... prec10738 .......... .......... ...... prec15007 .......... .......... ...... prec15019