At5g12840.1 68412.m08219 CCAAT box binding factor/ transcription factor Hap2a
Matching miRNAs:
| miRNA name | IGR name | mature miRNA sequence | Targets | Rfam | |
|---|---|---|---|---|---|
| 1 | prec1096 | igr1201#chr3#x1=4804107#l=2637_1618-1718 | AGCCAAGGATGACTTGCCGGT | 2 | |
| 2 | prec1109 | igr1201#chr3#x1=4804107#l=2637_1618-1718 | AGCCAAGGATGACTTGCCGG | 3 | |
| 3 | prec3121 | igr2011#chr4#x1=10447721#l=2403_320-398 | AGCCAAGGATGACTTGCCGG | 3 |
Gene Sequence:
AUGCAAUCAA AACCGGGAAG AGAAAACGAA GAGGAAGUCA AUAAUCACCA UGCUGUUCAG 60 .......... .......... .......... .......... .......... .......... prec1096 .......... .......... .......... .......... .......... .......... prec1109 .......... .......... .......... .......... .......... .......... prec3121 CAGCCGAUGA UGUAUGCAGA GCCCUGGUGG AAAAACAACU CCUUUGGUGU UGUACCUCAA 120 .......... .......... .......... .......... .......... .......... prec1096 .......... .......... .......... .......... .......... .......... prec1109 .......... .......... .......... .......... .......... .......... prec3121 GCGAGACCUU CUGGAAUUCC AUCAAAUUCC UCUUCUUUGG AUUGCCCCAA UGGUUCCGAG 180 .......... .......... .......... .......... .......... .......... prec1096 .......... .......... .......... .......... .......... .......... prec1109 .......... .......... .......... .......... .......... .......... prec3121 UCAAACGAUG UUCAUUCAGC AUCUGAAGAC GGUGCGUUGA AUGGUGAAAA CGAUGGCACU 240 .......... .......... .......... .......... .......... .......... prec1096 .......... .......... .......... .......... .......... .......... prec1109 .......... .......... .......... .......... .......... .......... prec3121 UGGAAGGAUU CACAAGCUGC AACUUCCUCU CGUUCAGUAG AUAAUCACGG AAUGGAAGGA 300 .......... .......... .......... .......... .......... .......... prec1096 .......... .......... .......... .......... .......... .......... prec1109 .......... .......... .......... .......... .......... .......... prec3121 AAUGACCCAG CGCUCUCUAU CCGUAACAUG CAUGAUCAGC CACUUGUACA ACCACCAGAG 360 .......... .......... .......... .......... .......... .......... prec1096 .......... .......... .......... .......... .......... .......... prec1109 .......... .......... .......... .......... .......... .......... prec3121 CUUGUUGGAC ACUAUAUCGC UUGUGUCCCA AACCCAUAUC AGGAUCCAUA UUAUGGGGGA 420 .......... .......... .......... .......... .......... .......... prec1096 .......... .......... .......... .......... .......... .......... prec1109 .......... .......... .......... .......... .......... .......... prec3121 UUGAUGGGAG CAUAUGGUCA UCAGCAAUUG GGUUUUCGUC CAUAUCUUGG AAUGCCUCGU 480 .......... .......... .......... .......... .......... .......... prec1096 .......... .......... .......... .......... .......... .......... prec1109 .......... .......... .......... .......... .......... .......... prec3121 GAAAGAACAG CUCUGCCACU UGACAUGGCA CAAGAGCCCG UUUAUGUGAA UGCAAAGCAG 540 .......... .......... .......... .......... .......... .......... prec1096 .......... .......... .......... .......... .......... .......... prec1109 .......... .......... .......... .......... .......... .......... prec3121 UACGAGGGAA UUCUAAGGCG AAGAAAAGCA CGUGCCAAGG CAGAGCUAGA GAGGAAAGUC 600 .......... .......... .......... .......... .......... .......... prec1096 .......... .......... .......... .......... .......... .......... prec1109 .......... .......... .......... .......... .......... .......... prec3121 AUCCGGGACA GAAAGCCAUA UCUUCACGAG UCAAGACACA AGCAUGCAAU GAGAAGGGCA 660 .......... .......... .......... .......... .......... .......... prec1096 .......... .......... .......... .......... .......... .......... prec1109 .......... .......... .......... .......... .......... .......... prec3121 CGAGCGAGUG GAGGCCGGUU UGCGAAGAAA AGUGAGGUAG AAGCGGGAGA GGAUGCAGGA 720 .......... .......... .......... .......... .......... .......... prec1096 .......... .......... .......... .......... .......... .......... prec1109 .......... .......... .......... .......... .......... .......... prec3121 GGGAGAGACA GAGAAAGGGG UUCAGCAACC AACUCAUCAG GCUCUGAACA AGUUGAGACA 780 .......... .......... .......... .......... .......... .......... prec1096 .......... .......... .......... .......... .......... .......... prec1109 .......... .......... .......... .......... .......... .......... prec3121 GACUCUAAUG AGACCCUGAA UUCUUCUGGU GCACCAUAAu aaaaaaagcc aaagcucuga 840 .......... .......... .......... .......... .......... .......... prec1096 .......... .......... .......... .......... .......... .......... prec1109 .......... .......... .......... .......... .......... .......... prec3121 gaggagagag agacacacac uuuggcuaau auaaucauug ccucaaaccg gcaaaucauu 900 .......... .......... .......... .......... ......**** ********** prec1096 .......... .......... .......... .......... .......*** ********** prec1109 .......... .......... .......... .......... .......*** ********** prec3121 cuuggcuuuu ucguuuuugu guuugcuagu uguucuuguc agagucucau auuguguggg 960 *******... .......... .......... .......... .......... .......... prec1096 *******... .......... .......... .......... .......... .......... prec1109 *******... .......... .......... .......... .......... .......... prec3121 uuuaacaguu augaugaaug uacaaagagc gaguuauguu agguguuaga uuuuggagac 1020 .......... .......... .......... .......... .......... .......... prec1096 .......... .......... .......... .......... .......... .......... prec1109 .......... .......... .......... .......... .......... .......... prec3121 aagagacuaa ggaauagcaa guaggucuug uuuuuauucu uugaccuuuu uuuucucuuu 1080 .......... .......... .......... .......... .......... .......... prec1096 .......... .......... .......... .......... .......... .......... prec1109 .......... .......... .......... .......... .......... .......... prec3121 ugcaaaauug aaaaauacgu uugcuuaauc guuugccuuu cugacc 1126 .......... .......... .......... .......... ...... prec1096 .......... .......... .......... .......... ...... prec1109 .......... .......... .......... .......... ...... prec3121