| IGR sequence: | igr3768#chr5#x1=18615936#l=2646 |
|---|---|
| Mature miRNA sequence: | UAUGCCUGGCUCCCUGUAUGCC |
| encoded miRNA: | MIR40c |
| Precursor location: | 1330 - 1414 (negative strand) |
| precursor length: | 85 (33 basepairs) |
| MIR position: | 1 - 22 (1393 - 1414) |
| MIR length: | 22 (20 paired bases) |
| miRNA location TIGR v3: | chr5:18617265<18617349 |
| miRNA location TIGR v5: | chr5:19026323<19026407 |
| Folding energy: | -45.80 |
| BLAST hit against RFAM Atha miRNAs: | ath-MIR160c |
| Belongs to miRNAs-targets cluster: | cluster017 |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
********** ********** **
UAUGCCUGGC UCCCUGUAUG CCACGAGUGG AUACCGAUUU UGGUUUUAAA AUCGGCUGCC 60
(((((-(((( (((-(((((( ((((--(--( ---((((((( ((____)))) ))))))--)-
GGUGGCGUAC AAGGAGUCAA GCAUG 85
-))))))))) )-)))))))- )))))
Postscript file CT file PNG file fasta file Stockholm file
Targets:
| Nr. | Gene | Description | mismatches | miRNAs |
|---|---|---|---|---|
| 1 | At1g77850.1 | 68408.m08325 transcriptional factor B3 family | 3 | 7 |
| 2 | At2g28350.1 | 68409.m03117 auxin response transcription factor | 3 | 4 |
| 3 | At4g30080.1 | 68411.m03904 transcription factor-related protein | 2 | 3 |
Rice homologs
- gnl|BL_ORD_ID|3135_22620-22717_1-22
- gnl|BL_ORD_ID|2696_53306-53403_1-22
- gnl|BL_ORD_ID|255_18393-18490_1-22
- gnl|BL_ORD_ID|252_117310-117407_1-22