View conserved binding sites


Gene
CM00008G04370
Description
Glutamate synthase 1 [NADH], chloroplastic
Alias
MELO3C008482;MELO3C008482T1
Binding siteNameDescriptionLocationPosition
Matrix_108PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-712
Upstream-713
Matrix_109GBF3Not availableUpstream-67
Upstream-712
Upstream-713
Matrix_127AtMYB15More than 80R2R3-MYB regulatory genes in the genome of Arabidopsis thalianaUpstream-1806
Matrix_129ABF1Not availableUpstream-713
Upstream-714
Matrix_130TCP16Not availableUpstream-758
Upstream-759
Matrix_145GBF4;AT5G44080Not availableUpstream-714
Upstream-715
Matrix_147ERF3;AT1G80580Not availableUpstream-1906
Upstream-1907
Matrix_156POC1Not availableUpstream-712
Upstream-713
Upstream-714
Upstream-715
Matrix_173ZAP1Not availableUpstream-1878
Upstream-1879
Matrix_179AtMYB84;MYB36;MYB68;O49746_ARATHNot availableUpstream-1771
Matrix_19PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signalingUpstream-713
Matrix_190ATERF1Not availableUpstream-378
Upstream-1906
Upstream-1907
Matrix_196TCP20;AT5G41030Not availableUpstream-756
Upstream-757
Matrix_211MYB3Not availableUpstream-1774
Matrix_214AP1Not availableUpstream-711
Upstream-712
Matrix_216TCP16Not availableUpstream-758
Upstream-759
Matrix_224ERF1Not availableUpstream-1905
Upstream-1906
Upstream-1908
Upstream-1909
Matrix_229CDC5A cdc5+ homolog of a higher plant, Arabidopsis thalianaUpstream-87
Matrix_232TCP23Not availableUpstream-597
Upstream-598
Upstream-757
Upstream-758
Matrix_233MYC3Not availableUpstream-714
Matrix_243RAP2.12;RAP2.2Not availableUpstream-1905
Upstream-1906
Matrix_247PIF3Not availableUpstream-713
Upstream-714
Matrix_252RAP2.6Not availableUpstream-1907
Upstream-1908
Matrix_266TCP16Determinants of the DNA binding specificity of class I and class II TCP transcription factorsUpstream-758
Upstream-759
Matrix_268EMB2749;VND5;SMB;VND1;ANAC076;NAC101;ANAC105Not availableUpstream-736
Upstream-737
Matrix_277RAP2.6Not availableUpstream-1905
Matrix_280TCP24;TCP1;BRC2;ATTCP18Not availableUpstream-598
Upstream-599
Matrix_294MEE35Not availableUpstream-758
Upstream-759
Matrix_295ERF1Not availableUpstream-1906
Upstream-1907
Matrix_296GBF2Not availableUpstream-713
Upstream-714
Matrix_297TCP15Not availableUpstream-597
Upstream-598
Upstream-757
Upstream-758
Matrix_3WRKY48Not availableUpstream-757
Matrix_300bZIP68;bZIP16Not availableUpstream-713
Upstream-714
Upstream-715
Matrix_305PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-711
Matrix_322NST3;ANAC015;BRN2Not availableUpstream-737
Upstream-738
Matrix_331GBF1Not availableUpstream-67
Upstream-712
Upstream-713
Matrix_332SPT;ALCNot availableUpstream-713
Upstream-714
Upstream-715
Matrix_343AT2G33710Not availableUpstream-1907
Matrix_344ATERF15;AT4G18450Not availableUpstream-1906
Upstream-1907
Matrix_345POC1Not availableUpstream-709
Upstream-710
Matrix_348AT5G51910Not availableUpstream-598
Upstream-599
Upstream-600
Upstream-758
Upstream-759
Upstream-760
Matrix_360ORA59Not availableUpstream-1906
Upstream-1907
Matrix_374AT5G07580;AT5G61590Not availableUpstream-1905
Upstream-1906
Matrix_378ATERF1Not availableUpstream-1907
Upstream-1908
Matrix_405DREB2CNot availableUpstream-1906
Matrix_406ATERF-7Not availableUpstream-1906
Upstream-1907
Matrix_42AT2G45680Not availableUpstream-598
Upstream-599
Upstream-758
Upstream-759
Matrix_420ANAC58Not availableUpstream-737
Matrix_44CUC3;anac046;NAC3;ANAC087;ATNAC6;CUC2Not availableUpstream-738
Upstream-739
Matrix_462ATERF-8Not availableUpstream-1906
Upstream-1907
Matrix_473RRTF1Not availableUpstream-1907
Upstream-1908
Matrix_484ATERF13Not availableUpstream-1906
Upstream-1907
Matrix_50ATERF14;AT5G43410Not availableUpstream-1905
Upstream-1906
Matrix_505GATA8Not availableUpstream-93
Matrix_507TCP3Not availableUpstream-600
Upstream-601
Upstream-757
Upstream-758
Matrix_55PIF3Not availableUpstream-712
Upstream-713
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-1908
Upstream-1909
Matrix_60AT1G01260;AT5G57150Not availableUpstream-714
Matrix_63ARR10Not availableUpstream-93
Matrix_64PIF5Not availableUpstream-714
Matrix_82TCP17Not availableUpstream-758
Upstream-759
Matrix_94TCP5Not availableUpstream-758
Upstream-759
Motif_125BOXIINTPATPBBox II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoterUpstream-472
Motif_155NODCON1GMOne of two putative nodulin consensus sequences; See also NODCON2GM; One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodulesUpstream-722
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-715
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-715
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-714
Upstream-715
Motif_244ABRE-like binding site motifNot availableUpstream-713
Upstream-715
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-1907
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-1879
Upstream-1923
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-69
Upstream-715
Upstream-881
Motif_346SND1;VND6;VND7;NST1;NST2Global analysis of direct targets of secondary wall NAC master switches in ArabidopsisUpstream-727
Motif_370TATABOX2TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationUpstream-468
Motif_410ANAERO1CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO1CONSENSUS by the PLACEdb curatorUpstream-348
Upstream-973
Upstream-980
Motif_411PRECONSCRHSP70AConsensus sequence of PRE (plastid response element) in the promoters of HSP70A in Chlamydomonas; Involved in induction of HSP70A gene by both MgProto and lightUpstream-385
Motif_422SP8BFIBSP8BIBOne of SPBF binding site (SP8b); Found at -330, -220, and -200 of gSPO-B1 (sporamin) gene, and also at -80 of gB-Amy (beta-amylase) gene; SP8BF recognizes both SP8a and SP8b sequences; See also SP8BFIBSP8AIB; SP8BF activity is also found in tobacco; SP8b found in the 5' upstream region of three differnt genes coding for sporamin and beta-amylase; Binding site of SPF1; SPF1 also binds to the SP8bUpstream-1887
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-714
Upstream-715
Motif_450E2FCONSENSUSE2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plantsUpstream-1882
Upstream-1926
Motif_473ABREOSRGA1ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxiaUpstream-714
Motif_563PYRIMIDINEBOXOSRAMY1APyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this siteUpstream-1902
Motif_575TATABOX3TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A geneUpstream-1952
Motif_585ATB2/AtbZIP53/AtbZIP44/GBF5 BS in ProDHPRE (Pro- or hypoosmolarity-responsive element) found in the promoter region of proline dehydrogenase (ProDH) gene in Arabidopsis; Core of 9-bp sequence ACTCATCCT which is necessary for the efficient expression of ProDH in response to L-Pro and hypoosmolarity; ATB2-binding site; Similar to GCN4 motif (ATGA(C/G)TCAT); ATB2 subgroup of bZIP transcription factors function as transcriptional activator for hypoosmolarity-inducible ProDH; A Novel Subgroup of bZIP Proteins Functions as Transctiptional Activators in Hypsosmolarity-Responsive Expression of the ProDH gene in ArabidopsisUpstream-458
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-1943
Upstream-1966
Motif_668TCA1MOTIFTCA-1 (tobacco nuclear protein 1) binding site; Related to salicylic acid-inducible expression of many genes; Found in barley beta-1,3-glucanase and over 30 different plant genes which are known to be induced by one or more forms of stress; A similar sequence (TCATTTCTT) was found in tobacco Tnt1 retrotransposon promoterUpstream-452
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-1943
Motif_85SORLIP5ATone of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Over-represented in both light-induced cotyledon-specific and root-specific genes; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-460