Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
WorkbenchBinding site page : Motif_313
- Identifier
- Motif_313
- Name
- ERF1 BS in AtCHI-B
- Description
- Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature
- Number of genes
- 4662
- Sequence
- GCCGCC
- Positional Weight Matrix
Binding site distribution per species
Binding site distribition per location
Toolbox
Explore
- ... associated Gene Ontology annotation of this binding site.
- ... associated InterPro annotation of this binding site.
- ... associated MapMan annotation of this binding site.
Associated Transcription Factors
| Transcription factor | Alias | Description | Orthologs | Associated motifs |
|---|---|---|---|---|
| AT3G23240 | ethylene response factor 1 | Q8LDC8;ETHYLENE RESPONSE FACTOR 1 | View orthologs | View associated binding sites |
Gene List
Index of genes with 1 constraints:
- Binding site : Motif_313
Page 1 of 234, showing 20 records out of 4662 total, starting on record 1, ending on 20
| gene_id | species | strand | chr | type |
|---|---|---|---|---|
| GM00G02420 | gma | - | scaffold_405 | coding |
| GM01G03160 | gma | - | Gm01 | coding |
| GM01G28830 | gma | - | Gm01 | coding |
| GM01G31921 | gma | - | Gm01 | coding |
| GM01G37590 | gma | - | Gm01 | coding |
| GM01G40050 | gma | + | Gm01 | coding |
| GM01G40100 | gma | + | Gm01 | coding |
| GM01G40320 | gma | + | Gm01 | coding |
| GM01G43650 | gma | - | Gm01 | coding |
| GM01G44600 | gma | - | Gm01 | coding |
| GM01G44690 | gma | + | Gm01 | coding |
| GM02G00870 | gma | - | Gm02 | coding |
| GM02G02481 | gma | - | Gm02 | coding |
| GM02G03050 | gma | - | Gm02 | coding |
| GM02G03920 | gma | - | Gm02 | coding |
| GM02G05830 | gma | - | Gm02 | coding |
| GM02G05870 | gma | - | Gm02 | coding |
| GM02G07300 | gma | + | Gm02 | coding |
| GM02G08720 | gma | + | Gm02 | coding |
| GM02G11580 | gma | - | Gm02 | coding |