PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_435
Name: ATHB51
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_461	ATHB12	Not Available	83.92%
Matrix_71	ATHB7	Not Available	83.25%
Matrix_302	HAT1; HAT2	Not Available	83.15%
Matrix_103	ATHB1	The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	80.63%
Matrix_131	HDG12; EDT1; GL2; HDG8	Not Available	79.56%
Motif_277	ATHB1 binding site motif	Recognition sequence of Arabidopsis Athb-1 protein; Athb-1 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); HD-Zip domain binds to DNA as a dimer; The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	78.53%
Matrix_182	ATHB6	Not Available	77.68%
Motif_87	AGL22; AGL20; AGL24	Regulation of floral patterning by flowering time genes	77.04%
Motif_352	ATHB5 binding site motif	Consensus binding sequence for Arabidopsis class I HDzip (Homeodomein-leucine zipper) protein, ATHB5; ATHB5 protein forms dimers in solution; ATHB5 and ATHB6 exhibit identical DNA binding specificities; ATHB5 forms heterodimers with other class I HDzip proteins; DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro	75.80%
Matrix_351	HAT9; ATHB-4; ATHB2; HAT22; HAT14	Not Available	75.66%
Matrix_441	ATHB5	Not Available	75.36%
Motif_169	ATHB2 binding site motif	Recognition sequence of Arabidopsis Athb-2 protein; Athb-2 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	72.32%
Matrix_93	YAB5	Not Available	72.13%
Motif_624	ATHB6 binding site motif	Consensus binding sequence for Arabidopsis homeodomain-leucine zipper protein, ATHB6; ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses; Homeodomain protein ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses in Arabidopsis	71.58%
Matrix_81	YAB1	Not Available	71.17%
Matrix_318	ATHB16	Not Available	70.30%
Matrix_88	AHL12	Not Available	70.10%
Motif_285	HDZIP2ATATHB2	Binding site of the Arabidopsis homeobox gene (ATHB-2) found in its own promoter; Located between -72 and -80; Similar to the HD-ZIP-2 binding consensus sequence; ATHB-2 is regulated by light signals which function as a negative autoregulator of its own gene	69.77%
Matrix_495	HD-GL2-1; ANL2	Not Available	69.50%
Matrix_62	HAT5	Not Available	68.58%
Matrix_347	WOX14; WOX10	Not Available	68.42%
Matrix_391	AHL20	Not Available	66.73%
Matrix_483	ICU4	Not Available	66.52%
Matrix_32	AHL25	Not Available	65.38%
Matrix_8	KAN1	Not Available	65.26%
Matrix_13	HAT5	Not Available	64.89%
Matrix_54	AHL20	Not Available	64.85%
Matrix_212	ATHB-12	Not Available	64.71%
Matrix_303	ATWOX13	Not Available	64.54%
Motif_656	AG BS in SUP	Dimerization specificity of Arabidopsis MADS domain homeotic proteins APETALA1, APETALA3, PISTILLATA, and AGAMOUS	64.51%
Matrix_157	LHY; RVE2	Not Available	64.33%
Matrix_9	AT5G04760	Not Available	63.15%
Matrix_431	ATHB21; HB-3	Not Available	63.03%
Matrix_225	MYB52	Not Available	62.19%
Matrix_512	HAT3	Not Available	62.09%
Matrix_491	AT1G68670; AT3G25790	Not Available	62.07%
Matrix_336	AT5G08520	Not Available	61.97%
Matrix_97	APRR2	Not Available	61.89%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	61.89%
Matrix_276	AT1G01520; AT3G09600; AT4G01280; LCL1; AT5G52660	Not Available	61.83%
Matrix_114	EPR1; AT3G10113	Not Available	61.80%
Matrix_429	KAN4	Not Available	61.76%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	61.36%
Matrix_168	AHL25	Not Available	61.03%
Matrix_255	cdf3	Not Available	60.95%
Motif_298	GMHDLGMVSPB	Binding site of the soybean homeodomein leucine zipper proteins (GmHdl56, GmHdl57); Found in the phosphate response domain of the soybean VspB promoter; Located between -536 and -527; VspB encodes vacuolar glycoprotein acid phosphatase that serve as vegetative storage protein	60.74%
Matrix_125	AHL12	Not Available	60.72%
Matrix_308	INO	Not Available	60.70%
Motif_464	ARR1; ARR2	Arabidopsis ARR1 and ARR2 response regulators operate as transcriptional activators	60.60%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	60.50%
Matrix_444	AT1G19485; AT4G17950	Not Available	60.34%
Matrix_259	AT1G50680; AT1G51120	Not Available	60.08%
Matrix_160	RVE1	Not Available	60.04%
Matrix_447	RVE1	Not Available	59.71%
Matrix_185	AHL25	Not Available	59.70%
Matrix_210	ARR1	Not Available	59.59%
Matrix_69	AT2G03500	Not Available	59.54%
Matrix_383	CCA1	Not Available	59.53%
Matrix_4	ARR14	Not Available	59.50%
Matrix_72	CDF2	Not Available	59.41%
Matrix_254	MYB52	Not Available	59.37%
Matrix_501	DAG2	Not Available	59.25%
Motif_142	HDZIPIIIAT	Ath b-9 HD-Zip (HD-Zip-9), a member of a small family of HD-Zip proteins (HD-ZIP III), in Arabidopsis recognize this sequence	59.14%
Matrix_434	ARR11	Not Available	58.99%
Matrix_162	AtPHR1	Not Available	58.40%
Matrix_361	AT1G25550	Not Available	58.37%
Motif_131	P1BS	PHR1-binding sequence found in the upstream regions of phosphate starvation responsive genes from several plant species; phr1 (phosphate starvation response 1) gene codes for PHR1 protein related to PSR1 gene in C. reinhardtii	58.32%
Matrix_99	DOF4.7	Not Available	58.28%
Motif_41	ARR2	Arabidopsis ARR1 and ARR2 response regulators operate as transcriptional activators	58.16%
Matrix_143	GATA14; GATA6; GATA5	Not Available	58.13%
Motif_581	AP1 BS in AP3	The CArG boxes in the promoter of the Arabidopsis floral organ identity gene APETALA3 mediate diverse regulatory effects	57.98%
Matrix_161	MYBC1; AT3G10760; LUX; AT5G05090; AT5G59570	Not Available	57.96%
Matrix_16	AT3G04450; PHL1	Not Available	57.88%
Matrix_206	CUC1; ANAC100	Not Available	57.71%
Matrix_324	AT2G01060	Not Available	57.68%
Matrix_249	WRKY11	Not Available	57.52%
Matrix_471	KAN4	Not Available	57.26%
Motif_673	Bellringer/replumless/pennywise BS2 IN AG	Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems	57.20%
Matrix_12	EIN3; EIL2	Not Available	57.20%
Matrix_328	AT1G76580	Not Available	57.18%
Motif_637	SARD1; CBP60g	Control of salicylic acid synthesis and systemic acquired resistance by two members of a plant-specific family of transcription factors	57.17%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	57.10%
Motif_91	SORLIP4AT	one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	57.07%
Matrix_401	MYB55	Not Available	57.02%
Matrix_271	AT3G16350	Not Available	56.74%
Matrix_453	EIL3	Not Available	56.51%
Matrix_366	ARR14	Not Available	56.38%
Matrix_178	HSFB2A	Not Available	56.28%
Matrix_521	AHL20	Not Available	56.28%
Matrix_274	EDF3	Not Available	56.27%
Matrix_423	AT3G04030	Not Available	56.13%
Matrix_87	AT1G19000	Not Available	56.01%
Matrix_106	AT5G47390	Not Available	55.99%
Matrix_500	WRKY43	Not Available	55.99%
Matrix_236	CCA1	Not Available	55.99%
Matrix_408	GATA12	Not Available	55.96%
Motif_231	EIN3	Ethylene signaling in Arabidopsis involves feedback regulation via the elaborate control of EBF2 expression by EIN3	55.83%
Matrix_314	WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52	Not Available	55.72%
Matrix_392	ARR2	Not Available	55.70%
Matrix_416	ASL5	Not Available	55.67%
Matrix_227	AT1G64620	Not Available	55.63%
Matrix_333	GATA3	Not Available	55.59%
Matrix_286	GATA7	Not Available	55.57%
Matrix_237	MYB55	Not Available	55.54%
Motif_373	TATABOX1	TATA box; TATA box found in the 5'upstream region of rice alpha-amylase; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation	55.52%
Matrix_494	OBP4	Not Available	55.14%
Matrix_89	SOC1	Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis	55.09%
Matrix_204	WOX13	Not Available	55.04%
Matrix_455	MYB111	Not Available	54.98%
Matrix_167	ZAT6	Not Available	54.82%
Matrix_41	anac058	Not Available	54.81%
Matrix_46	AT4G21895	Not Available	54.79%
Matrix_316	WRKY15; WRKY39; WRKY7; WRKY74	Not Available	54.64%
Motif_547	AG BS in AP3	The CArG boxes in the promoter of the Arabidopsis floral organ identity gene APETALA3 mediate diverse regulatory effects	54.52%
Matrix_67	GLK1	Not Available	54.50%
Matrix_85	SPL5	Not Available	54.35%
Matrix_177	ADOF2	Not Available	54.33%
Matrix_199	AT1G69170; SPL9; SPL15; SPL13A; SPL13B	Not Available	54.32%
Motif_533	Bellringer/replumless/pennywise BS3 IN AG	Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems	54.31%
Matrix_327	ARR11	Not Available	54.24%
Motif_284	GT-2	DNA binding factor GT-2 from Arabidopsis	54.19%
Matrix_124	AtHB23; ATHB13; ATHB20; ATHB5	Not Available	54.13%
Motif_477	MYB1; MYB2	An Arabidopsis myb homolog is induced by dehydration stress and its gene product binds to the conserved MYB recognition sequence;Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen	54.00%
Motif_198	CARGATCONSENSUS	CArG consensus sequence found in the promoter of Arabidopsis SOC1 which is the MADS-box flowering-time gene; FLC is a component of the vernalization (low-temperature) pathway binds directly to this site and blocks transcriptional activation of SOC1 by CONSTANS (CO)	53.98%
Matrix_511	AT1G05805; AT1G35460; AT1G51140; AT2G42280; AT2G43140; AT4G09180	Not Available	53.97%
Matrix_258	WOX13	Not Available	53.95%
Matrix_152	EIL1; AT5G65100	Not Available	53.87%
Matrix_357	WRKY61; WRKY6; WRKY9; WRKY36; WRKY47; WRKY42; WRKY31; WRKY72	Not Available	53.79%
Matrix_29	AP1	Not Available	53.68%
Matrix_129	ABF1	Not Available	53.63%
Matrix_519	ATDOF2.4	Not Available	53.50%
Matrix_411	DOF5.6	Not Available	53.48%
Motif_18	5659BOXLELAT5659	56/59 box; A sequence motif shared between the tomato LAT(Late Anther Tomato)56 and LAT59 promoters; Found in -103 to -94 in LAT56 and in -114 to -105 in LAT59; Involved in modulating the activity of the LAT gene promoters in pollen	53.44%
Motif_147	HDMOTIFPCPR2	HD (homeodomain) protein target site in parsley pathogenesis-related protein 2 (PR2); A potential in vivo target site	53.30%
Matrix_78	AT3G45610	Not Available	53.27%
Matrix_317	AT1G06070; AT2G31370; AT2G40620	Not Available	53.18%
Matrix_21	HSFC1	Not Available	53.17%
Matrix_195	GATA2; GATA4	Not Available	52.89%
Motif_334	MYB1; MYB2	An Arabidopsis myb homolog is induced by dehydration stress and its gene product binds to the conserved MYB recognition sequence. Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen	52.87%
Matrix_70	GATA26	Not Available	52.86%
Motif_345	GT-1	Molecular dissection of GT-1 from Arabidopsis	52.86%
Matrix_425	TIFY2A	Not Available	52.81%
Matrix_226	GATA1	Not Available	52.77%
Matrix_523	FUSCA3	Not Available	52.67%
Matrix_14	ZCW32; AT5G62610	Not Available	52.63%
Matrix_315	MYB111	Not Available	52.62%
Matrix_518	AT2G21230	Not Available	52.59%
Motif_382	CATATGGMSAUR	Sequence found in NDE element in soybean SAUR (Small Auxin-Up RNA) 15A gene promoter; Involved in auxin responsiveness	52.51%
Matrix_6	AT1G70000	Not Available	52.51%
Matrix_17	WRKY22	Not Available	52.44%
Motif_235	C8GCARGAT	Binding site of plant MADS-domain protein AGL15; CArG motif with a longer A/T-rich core;A variant of CArG motif, with a longer A/T-rich core; Binding site for AGL15 (AGAMOUS-like 15)	52.40%
Matrix_136	SEP3	Not Available	52.39%
Matrix_142	ZFP8	Not Available	52.38%
Matrix_181	Dof5.7	Not Available	52.28%
Motif_582	ARR1; ARR2	Arabidopsis ARR1 and ARR2 response regulators operate as transcriptional activators	52.26%
Matrix_205	AGL15	Not Available	52.20%
Matrix_341	HMGA	Not Available	52.19%
Matrix_404	OBP4	Not Available	52.12%
Matrix_233	MYC3	Not Available	52.06%
Matrix_38	SPL14	Not Available	52.04%
Matrix_197	NAP	Not Available	52.03%
Matrix_44	CUC3; anac046; NAC3; ANAC087; ATNAC6; CUC2	Not Available	52.03%
Motif_424	GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	51.98%
Matrix_474	ANAC014; ANAC062; NTL9; TIP	Not Available	51.92%
Matrix_151	ASIL1	Not Available	51.90%
Motif_116	INRNTPSADB	Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box	51.82%
Matrix_350	ARR14	Not Available	51.73%
Motif_181	IBOXCORENT	I-box core motif in the CAMs (conserved DNA modular arrays) associated with light-responsive promoter regions	51.64%
Motif_297	Bellringer/replumless/pennywise BS1 IN AG	Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems	51.63%
Matrix_502	AT3G13040	Not Available	51.62%
Matrix_337	MYB46	Not Available	51.61%
Matrix_505	GATA8	Not Available	51.54%
Motif_579	WRECSAA01	Wound-responsive element (WRE) found in the promoter region of cucumber ascorbate oxidase gene, CsAAO1; Binding site of proteins in tobacco nuclear extracts	51.51%
Motif_677	AGL22; AGL20; AGL24	Regulation of floral patterning by flowering time genes	51.49%
Matrix_415	WRKY27	Not Available	51.41%
Matrix_268	EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105	Not Available	51.38%
Matrix_421	GLK1	Not Available	51.37%
Matrix_51	LFY	Not Available	51.29%
Motif_495	TRANSINITMONOCOTS	Context sequence of translational initiation codon in monocots	51.27%
Motif_356	S2FSORPL21	S2F binding site (S2 site) in spinach RPL21 gene encoding the plastid ribosomal protein L21; S2 site (CATACAWW) is conserved in promoter region of many nuclear genes encoding plastid proteins; Leaf-specific, light-independent regulatory element; S2 site is related to but different from the light-responsive GT-1 binding site	51.05%
Motif_675	FUS3; ABI3	Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	50.93%
Matrix_332	SPT; ALC	Not Available	50.93%
Motif_422	SP8BFIBSP8BIB	One of SPBF binding site (SP8b); Found at -330, -220, and -200 of gSPO-B1 (sporamin) gene, and also at -80 of gB-Amy (beta-amylase) gene; SP8BF recognizes both SP8a and SP8b sequences; See also SP8BFIBSP8AIB; SP8BF activity is also found in tobacco; SP8b found in the 5' upstream region of three differnt genes coding for sporamin and beta-amylase; Binding site of SPF1; SPF1 also binds to the SP8b	50.93%
Matrix_203	GATA9; GATA12	Not Available	50.90%
Motif_279	POLASIG3	Plant polyA signal; Consensus sequence for plant polyadenylation signal	50.87%
Matrix_382	AT3G04850	Not Available	50.86%
Matrix_313	ATMYB65; MYB33	Not Available	50.77%
Motif_183	TRANSINITDICOTS	Context sequence of translational initiation codon in dicots	50.72%
Motif_367	FUS3	Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	50.67%
Matrix_141	AT3G25990	Not Available	50.52%
Motif_347	OPAQUE2ZMB32	opaque-2 binding site of maize b-32 (type I ribosome-inactivating protein gene); O2; O2S; O2S and GARE form a gibberellin response complex (GARC)	50.49%
Motif_34	LECPLEACS2	Core element in LeCp (tomato Cys protease) binding cis-element (from -715 to -675) in LeAcs2 gene	50.36%
Matrix_469	NAC041; NAC083	Not Available	50.36%
Matrix_354	AHL12	Not Available	50.35%
Motif_540	CCA1 motif1 BS in CAB1	A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene	50.25%
Motif_408	EVENINGAT	Evening element found 46 times in the promoters of 31 cycling genes in Arabidopsis thaliana; Required for circadian control of gene expression; EE (evening element) motif; Also found in the promoter of the Solanum melongena gene encoding cysteine protease, and identified as cis-element for its circadian regulation;Orchestrated transcription of key pathways in Arabidopsis by the circadian clock	50.20%
Matrix_424	MYB59	Not Available	50.20%
Matrix_115	AGL15	Not Available	50.19%
Motif_615	MARTBOX	T-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)	50.16%
Matrix_202	WRKY71; WRKY28; WRKY8	Not Available	50.11%
Matrix_63	ARR10	Not Available	50.11%
Matrix_80	BIM1	Not Available	50.08%
Matrix_53	MYC3	Not Available	50.07%