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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
tps142420
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
tps142420
Thalassiosira pseudonana
5.9e-146
518.1
239
100.0
CC00G149660
Cyclotella cryptica
1.0e-126
454.1
299
73.2
fso199510
Fistulifera solaris
1.2e-111
404.1
278
68.3
fso73640
Fistulifera solaris
4.4e-109
395.6
278
67.3
ptri69840
Phaeodactylum tricornutum
3.7e-108
392.5
285
62.8
tps193950
Thalassiosira pseudonana
5.4e-107
388.7
240
74.2
Sro70_g039030
Seminavis robusta
5.1e-105
382.1
270
64.4
Sro695_g188680
Seminavis robusta
1.1e-104
380.9
248
72.2
sya00G196410
Synedra acus
8.9e-102
371.3
272
61.8
ptri72160
Phaeodactylum tricornutum
2.6e-101
369.8
270
62.2
gene18213
Fragilariopsis cylindrus
3.2e-99
362.8
273
60.1
ps00G65070
Pseudo-nitzschia multiseries
4.1e-99
362.5
279
59.9
fso43770
Fistulifera solaris
3.3e-96
352.8
274
61.3
fso64760
Fistulifera solaris
3.3e-96
352.8
274
61.3
CC00G122160
Cyclotella cryptica
9.9e-93
341.3
208
75.0
tps130000
Thalassiosira pseudonana
1.7e-84
313.9
240
54.2
sya00G161050
Synedra acus
2.9e-84
313.2
240
54.6
ps00G33510
Pseudo-nitzschia multiseries
8.4e-84
311.6
240
53.3
fso77080
Fistulifera solaris
1.1e-83
311.2
240
54.2
Sro99_g050950
Seminavis robusta
1.1e-83
311.2
240
54.2
Sro968_g226070
Seminavis robusta
1.9e-83
310.5
240
54.6
gene16313
Fragilariopsis cylindrus
2.7e-82
306.6
240
52.5
ptri130290
Phaeodactylum tricornutum
3.5e-82
306.2
240
52.9
fso77050
Fistulifera solaris
7.9e-82
305.1
242
56.6
fso191720
Fistulifera solaris
1.0e-81
304.7
242
56.6
fso160310
Fistulifera solaris
1.5e-80
300.8
240
52.9
tho217020
Thalassiosira oceanica
2.8e-79
296.6
239
53.6
sya00G00440
Synedra acus
1.5e-72
274.2
162
71.6
tho328140
Thalassiosira oceanica
6.7e-49
195.7
284
38.7
CC00G69060
Cyclotella cryptica
1.3e-47
191.4
147
52.4
FBgn0031816
Drosophila melanogaster
4.1e-46
186.4
240
38.3
Sro9_g007140
Seminavis robusta
6.9e-46
185.7
146
55.5
ENSG00000163743
Homo sapiens
1.9e-43
177.6
227
35.7
Cre05.g248550
Chlamydomonas reinhardtii
5.1e-41
169.5
245
40.0
CM13G01410
Cyanidioschyzon merolae
1.2e-37
158.3
242
37.6
AT1G18910
Arabidopsis thaliana
5.9e-37
156.0
241
36.5
AT1G74770
Arabidopsis thaliana
2.2e-36
154.1
241
33.6
AT3G18290
Arabidopsis thaliana
5.5e-35
149.4
244
34.0
AT3G62970
Arabidopsis thaliana
9.4e-35
148.7
247
36.8
CC00G86210
Cyclotella cryptica
3.6e-34
146.7
251
32.3
Ec-26_004520
Ectocarpus siliculosus
6.1e-34
146.0
262
37.4
Pp3c14_5600
Physcomitrella patens
3.0e-33
143.7
247
35.6
Pp3c6_1960
Physcomitrella patens
1.5e-32
141.4
240
35.8
Cre17.g718300
Chlamydomonas reinhardtii
2.0e-32
141.0
246
36.2
fso155640
Fistulifera solaris
2.0e-32
141.0
249
30.5
ccr65580
Chondrus crispus
3.3e-32
140.2
246
30.9
Naga_100090g9
Nannochloropsis gaditana
3.3e-32
140.2
248
30.6
SPAC2F3.16
Schizosaccharomyces pombe
7.5e-32
139.0
245
35.1
Pp3c25_14501
Physcomitrella patens
1.7e-31
137.9
240
35.4
Pp3c25_14500
Physcomitrella patens
1.7e-31
137.9
240
35.4
AT5G22920
Arabidopsis thaliana
8.2e-31
135.6
249
34.9
Pp3c10_4820
Physcomitrella patens
8.2e-31
135.6
245
34.3
ccr36960
Chondrus crispus
1.1e-30
135.2
246
35.4
Pp3c1_6070
Physcomitrella patens
1.1e-30
135.2
246
34.1
Pp3c2_31820
Physcomitrella patens
1.4e-30
134.8
246
35.0
tps146910
Thalassiosira pseudonana
3.1e-30
133.7
220
32.3
Pp3c11_6970
Physcomitrella patens
7.0e-30
132.5
246
33.7
ccr161060
Chondrus crispus
1.6e-29
131.3
249
32.5
AT5G18650
Arabidopsis thaliana
1.0e-28
128.6
245
33.1
ps00G05920
Pseudo-nitzschia multiseries
1.0e-28
128.6
251
34.3
gsu76240
Galdieria sulphuraria
5.5e-27
122.9
246
31.3
AT5G25560
Arabidopsis thaliana
4.0e-25
116.7
227
36.6
pte443830
Paramecium tetraurelia
8.8e-25
115.5
247
32.4
pte760660
Paramecium tetraurelia
1.1e-22
108.6
254
31.5
fso150310
Fistulifera solaris
1.4e-22
108.2
188
30.9
gene11141
Fragilariopsis cylindrus
2.3e-17
90.9
174
33.3
PSNMU-V1.4_AUG-EV-PASAV3_0108560
Pseudo-nitzschia multistriata
5.4e-14
79.7
53
54.7
ccr143140
Chondrus crispus
2.0e-13
77.8
149
36.9
Sro9_g007130
Seminavis robusta
4.9e-07
56.6
27
66.7
CC00G85450
Cyclotella cryptica
6.4e-07
56.2
27
77.8
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (3 genes)
Thalassiosira pseudonana (4 genes)
Thalassiosira oceanica (2 genes)
Pseudo-nitzschia multiseries (3 genes)
Fistulifera solaris (10 genes)
Fragilariopsis cylindrus (3 genes)
Cyclotella cryptica (5 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (1 genes)
Nannochloropsis gaditana (1 genes)
Homo sapiens (1 genes)
Drosophila melanogaster (1 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (1 genes)
Arabidopsis thaliana (7 genes)
Cyanidioschyzon merolae (1 genes)
Chondrus crispus (4 genes)
Galdieria sulphuraria (1 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (2 genes)
Seminavis robusta (6 genes)
Synedra acus (3 genes)
Physcomitrella patens (8 genes)
Chlamydomonas reinhardtii (2 genes)
Pseudo-nitzschia multistriata (1 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing