Ks-graphs  

The Ks-graphs tool allows you to overlay several Ks graphs of colinear gene pairs.

Experiment options

#Comparisons

1234

Comparison 1

Collinearity Run

all species undated, gap size 15 diatoms dated, gap size 15

Organism 1

Phaeodactylum tricornutum Thalassiosira pseudonana Thalassiosira oceanica Pseudo-nitzschia multiseries Fistulifera solaris Fragilariopsis cylindrus Cyclotella cryptica Aureococcus anophagefferens Ectocarpus siliculosus Nannochloropsis gaditana Homo sapiens Drosophila melanogaster Caenorhabditis elegans Saccharomyces cerevisiae strain S288C Schizosaccharomyces pombe Arabidopsis thaliana Cyanidioschyzon merolae Chondrus crispus Galdieria sulphuraria Emiliania huxleyi Paramecium tetraurelia Seminavis robusta Synedra acus Physcomitrella patens Chlamydomonas reinhardtii Pseudo-nitzschia multistriata

Organism 2

Phaeodactylum tricornutum Thalassiosira pseudonana Thalassiosira oceanica Pseudo-nitzschia multiseries Fistulifera solaris Fragilariopsis cylindrus Cyclotella cryptica Aureococcus anophagefferens Ectocarpus siliculosus Nannochloropsis gaditana Homo sapiens Drosophila melanogaster Caenorhabditis elegans Saccharomyces cerevisiae strain S288C Schizosaccharomyces pombe Arabidopsis thaliana Cyanidioschyzon merolae Chondrus crispus Galdieria sulphuraria Emiliania huxleyi Paramecium tetraurelia Seminavis robusta Synedra acus Physcomitrella patens Chlamydomonas reinhardtii Pseudo-nitzschia multistriata

Plot options

Bin size

0.1 0.05

Figure style

lines bar

Normalization

on off

Max Ks value

1 2 3 4 5