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Interactive Phylogenetics Module
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Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
AT5G14580
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
AT5G14580
Arabidopsis thaliana
0.0e+00
1920.2
992
100.0
Pp3c2_19900
Physcomitrella patens
1.7e-239
830.9
734
57.5
Pp3c1_22150
Physcomitrella patens
2.2e-218
760.8
734
54.8
ENSG00000138035
Homo sapiens
2.8e-149
531.2
705
40.7
FBgn0039846
Drosophila melanogaster
3.0e-135
484.6
708
40.0
sya00G179840
Synedra acus
1.3e-133
479.2
633
42.2
gsu31610
Galdieria sulphuraria
8.5e-130
466.5
719
40.9
CC00G119790
Cyclotella cryptica
1.1e-129
466.1
747
38.4
Pp3c6_15550
Physcomitrella patens
3.6e-128
461.1
773
36.0
Ec-16_001470
Ectocarpus siliculosus
1.0e-127
459.5
746
37.7
AT3G03710
Arabidopsis thaliana
1.4e-124
449.1
792
38.0
Sro829_g208050
Seminavis robusta
2.4e-124
448.4
754
37.5
Naga_100010g76
Nannochloropsis gaditana
6.9e-124
446.8
918
34.1
gsu66490
Galdieria sulphuraria
2.9e-122
441.4
729
37.9
ccr30780
Chondrus crispus
1.9e-121
438.7
715
37.2
gene16889
Fragilariopsis cylindrus
1.6e-120
435.6
722
37.4
sya00G45360
Synedra acus
6.1e-120
433.7
748
36.8
tps130260
Thalassiosira pseudonana
1.8e-119
432.2
681
37.7
fso46530
Fistulifera solaris
3.0e-119
431.4
754
36.9
fso76780
Fistulifera solaris
3.0e-119
431.4
754
37.1
Ec-28_001180
Ectocarpus siliculosus
1.1e-118
429.5
777
36.7
PSNMU-V1.4_AUG-EV-PASAV3_0082120
Pseudo-nitzschia multistriata
1.5e-118
429.1
755
36.6
CM08G01460
Cyanidioschyzon merolae
5.7e-118
427.2
744
37.2
ptri130250
Phaeodactylum tricornutum
3.4e-115
417.9
721
37.0
ps00G169000
Pseudo-nitzschia multiseries
1.4e-111
406.0
760
35.9
WBGene00015266
Caenorhabditis elegans
1.2e-107
392.9
711
36.6
Naga_101073g1
Nannochloropsis gaditana
1.1e-100
369.8
580
37.8
AA0021G00080
Aureococcus anophagefferens
9.1e-100
366.7
711
34.5
Cre04.g214501
Chlamydomonas reinhardtii
3.0e-95
351.7
698
32.4
ccr183720
Chondrus crispus
8.0e-88
327.0
715
34.1
tps203110
Thalassiosira pseudonana
3.1e-84
315.1
688
33.6
sya00G00770
Synedra acus
5.4e-84
314.3
896
31.1
ptri165950
Phaeodactylum tricornutum
4.3e-81
304.7
936
30.3
CM17G03240
Cyanidioschyzon merolae
6.1e-80
300.8
770
31.8
CC00G183210
Cyclotella cryptica
5.2e-79
297.7
930
27.5
ps00G134730
Pseudo-nitzschia multiseries
9.8e-78
293.5
694
32.6
Sro4_g002940
Seminavis robusta
2.0e-75
285.8
908
29.1
PSNMU-V1.4_AUG-EV-PASAV3_0121390
Pseudo-nitzschia multistriata
2.5e-73
278.9
946
28.2
gene8770
Fragilariopsis cylindrus
1.8e-71
272.7
704
31.0
sya00G124920
Synedra acus
5.1e-66
254.6
463
38.2
emh482830
Emiliania huxleyi
2.0e-62
242.7
606
30.7
tho59980
Thalassiosira oceanica
7.3e-49
197.6
323
36.8
tho60000
Thalassiosira oceanica
1.1e-44
183.7
338
35.8
Sro968_g226120
Seminavis robusta
1.0e-18
97.4
115
45.2
sya00G177690
Synedra acus
5.7e-17
91.7
389
26.2
sya00G227640
Synedra acus
7.4e-17
91.3
389
26.5
Pp3s48_50
Physcomitrella patens
1.0e-10
70.9
162
32.7
AT3G61620
Arabidopsis thaliana
3.0e-10
69.3
206
27.7
tps208390
Thalassiosira pseudonana
1.5e-09
67.0
108
42.6
AT5G30510
Arabidopsis thaliana
2.0e-09
66.6
111
36.0
ccr158160
Chondrus crispus
7.4e-09
64.7
79
46.8
WBGene00007201
Caenorhabditis elegans
1.3e-08
63.9
173
32.4
Pp3c20_22450
Physcomitrella patens
1.3e-08
63.9
77
44.2
gene14017
Fragilariopsis cylindrus
1.7e-08
63.5
80
42.5
Pp3c10_21790
Physcomitrella patens
1.7e-08
63.5
77
44.2
sya00G244720
Synedra acus
2.2e-08
63.2
94
40.4
tho446400
Thalassiosira oceanica
2.2e-08
63.2
104
40.4
AA0022G00900
Aureococcus anophagefferens
2.8e-08
62.8
76
46.1
AA0024G00510
Aureococcus anophagefferens
2.8e-08
62.8
76
46.1
CC00G45940
Cyclotella cryptica
2.8e-08
62.8
108
40.7
fso61850
Fistulifera solaris
2.8e-08
62.8
108
38.9
ps00G175280
Pseudo-nitzschia multiseries
2.8e-08
62.8
94
39.4
ptri176910
Phaeodactylum tricornutum
2.8e-08
62.8
125
35.2
fso166060
Fistulifera solaris
3.7e-08
62.4
108
38.0
PSNMU-V1.4_AUG-EV-PASAV3_0026780
Pseudo-nitzschia multistriata
6.3e-08
61.6
80
41.2
emh424880
Emiliania huxleyi
8.2e-08
61.2
79
44.3
gsu81330
Galdieria sulphuraria
8.2e-08
61.2
167
31.1
Cre09.g394750
Chlamydomonas reinhardtii
1.1e-07
60.8
77
44.2
Sro581_g170300
Seminavis robusta
1.1e-07
60.8
94
39.4
Ec-26_002420
Ectocarpus siliculosus
1.4e-07
60.5
81
42.0
sya00G238940
Synedra acus
1.4e-07
60.5
59
45.8
gsu46940
Galdieria sulphuraria
1.8e-07
60.1
111
33.3
SPAC3G9.10c
Schizosaccharomyces pombe
5.3e-07
58.5
159
28.3
Naga_100014g12
Nannochloropsis gaditana
6.9e-07
58.2
76
46.1
Pp3c3_11840
Physcomitrella patens
9.1e-07
57.8
74
39.2
Pp3c3_11830
Physcomitrella patens
9.1e-07
57.8
74
39.2
AT4G29060
Arabidopsis thaliana
1.5e-06
57.0
93
34.4
CM13G00190
Cyanidioschyzon merolae
1.5e-06
57.0
178
28.7
CM18G01180
Cyanidioschyzon merolae
4.5e-06
55.5
82
42.7
emh552790
Emiliania huxleyi
4.5e-06
55.5
74
36.5
gsu19850
Galdieria sulphuraria
4.5e-06
55.5
82
34.1
sya00G15580
Synedra acus
5.9e-06
55.1
67
38.8
Cre12.g519180
Chlamydomonas reinhardtii
7.7e-06
54.7
152
28.3
gsu67430
Galdieria sulphuraria
7.7e-06
54.7
90
33.3
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (3 genes)
Thalassiosira pseudonana (3 genes)
Thalassiosira oceanica (3 genes)
Pseudo-nitzschia multiseries (3 genes)
Fistulifera solaris (4 genes)
Fragilariopsis cylindrus (3 genes)
Cyclotella cryptica (3 genes)
Aureococcus anophagefferens (3 genes)
Ectocarpus siliculosus (3 genes)
Nannochloropsis gaditana (3 genes)
Homo sapiens (1 genes)
Drosophila melanogaster (1 genes)
Caenorhabditis elegans (2 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (1 genes)
Arabidopsis thaliana (5 genes)
Cyanidioschyzon merolae (4 genes)
Chondrus crispus (3 genes)
Galdieria sulphuraria (6 genes)
Emiliania huxleyi (3 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (4 genes)
Synedra acus (9 genes)
Physcomitrella patens (8 genes)
Chlamydomonas reinhardtii (3 genes)
Pseudo-nitzschia multistriata (3 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing