Gene: AT3G61620 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT3G61620
Transcript Identifier
AT3G61620.1
Gene Type
Coding gene
Location
3 : 22801382-22802910 : negative

Family Information

Homologous gene family
HOM02SEM001100
(46 genes in 25 species)
specific family

Descriptions

Description
3'-5'-exoribonuclease family protein
Curated Summary
exonuclease RRP41 (RRP41)
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Identifiers

Type Value
aliasRRP41

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006396
ISS
Gene OntologyRNA processing1
GO:0031126
IEA
PLAZA Integrative OrthologysnoRNA 3'-end processing YGR195W
GO:0031125
IEA
PLAZA Integrative OrthologyrRNA 3'-end processing YGR195W
GO:0050789
IEA
PLAZA Integrative Orthologyregulation of biological process SPAC3G9.10c
GO:0034476
IEA
PLAZA Integrative OrthologyU5 snRNA 3'-end processing YGR195W
GO:0031123
IEA
PLAZA Integrative OrthologyRNA 3'-end processing YGR195W
GO:0010605
IEA
PLAZA Integrative Orthologynegative regulation of macromolecule metabolic process SPAC3G9.10c
GO:0070651
IEA
PLAZA Integrative Orthologynonfunctional rRNA decay YGR195W
GO:0044271
IEA
PLAZA Integrative Orthologycellular nitrogen compound biosynthetic process SPAC3G9.10c
GO:0010608
IEA
PLAZA Integrative Orthologyposttranscriptional regulation of gene expression ENSG00000223496
GO:0044270
IEA
PLAZA Integrative Orthologycellular nitrogen compound catabolic process SPAC3G9.10c
GO:0006353
IEA
PLAZA Integrative OrthologyDNA-templated transcription, termination SPAC3G9.10c
GO:1901575
IEA
PLAZA Integrative Orthologyorganic substance catabolic process SPAC3G9.10c
GO:1901576
IEA
PLAZA Integrative Orthologyorganic substance biosynthetic process SPAC3G9.10c
GO:0006351
IEA
PLAZA Integrative Orthologytranscription, DNA-templated SPAC3G9.10c
GO:0034645
IEA
PLAZA Integrative Orthologycellular macromolecule biosynthetic process SPAC3G9.10c
GO:0050896
IEA
PLAZA Integrative Orthologyresponse to stimulus FBgn0032487
GO:0044265
IEA
PLAZA Integrative Orthologycellular macromolecule catabolic process SPAC3G9.10c
GO:0030847
IEA
PLAZA Integrative Orthologytermination of RNA polymerase II transcription, exosome-dependent SPAC3G9.10c
GO:0009605
IEA
PLAZA Integrative Orthologyresponse to external stimulus FBgn0032487
GO:0044260
IEA
PLAZA Integrative Orthologycellular macromolecule metabolic process SPAC3G9.10c
GO:0009607
IEA
PLAZA Integrative Orthologyresponse to biotic stimulus FBgn0032487
GO:0009615
IEA
PLAZA Integrative Orthologyresponse to virus FBgn0032487
GO:0009058
IEA
PLAZA Integrative Orthologybiosynthetic process SPAC3G9.10c
GO:0009059
IEA
PLAZA Integrative Orthologymacromolecule biosynthetic process SPAC3G9.10c
GO:0009056
IEA
PLAZA Integrative Orthologycatabolic process SPAC3G9.10c
GO:0009057
IEA
PLAZA Integrative Orthologymacromolecule catabolic process SPAC3G9.10c
GO:0043207
IEA
PLAZA Integrative Orthologyresponse to external biotic stimulus FBgn0032487
GO:0019438
IEA
PLAZA Integrative Orthologyaromatic compound biosynthetic process SPAC3G9.10c
GO:0071840
IEA
PLAZA Integrative Orthologycellular component organization or biogenesis YGR195W
GO:0034654
IEA
PLAZA Integrative Orthologynucleobase-containing compound biosynthetic process SPAC3G9.10c
GO:0070478
IEA
PLAZA Integrative Orthologynuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay YGR195W
GO:0010468
IEA
PLAZA Integrative Orthologyregulation of gene expression SPAC3G9.10c
GO:0034655
IEA
PLAZA Integrative Orthologynucleobase-containing compound catabolic process SPAC3G9.10c
GO:0071047
IEA
PLAZA Integrative Orthologypolyadenylation-dependent mRNA catabolic process YGR195W
GO:0071046
IEA
PLAZA Integrative Orthologynuclear polyadenylation-dependent ncRNA catabolic process YGR195W
GO:0071043
IEA
PLAZA Integrative OrthologyCUT metabolic process YGR195W
GO:0010629
IEA
PLAZA Integrative Orthologynegative regulation of gene expression SPAC3G9.10c
GO:0098542
IEA
PLAZA Integrative Orthologydefense response to other organism FBgn0032487
GO:0071042
IEA
PLAZA Integrative Orthologynuclear polyadenylation-dependent mRNA catabolic process YGR195W
GO:0044248
IEA
PLAZA Integrative Orthologycellular catabolic process SPAC3G9.10c
GO:0006259
IEA
PLAZA Integrative OrthologyDNA metabolic process ENSG00000223496
GO:0044249
IEA
PLAZA Integrative Orthologycellular biosynthetic process SPAC3G9.10c
GO:0046700
IEA
PLAZA Integrative Orthologyheterocycle catabolic process SPAC3G9.10c
GO:0034660
IEA
PLAZA Integrative OrthologyncRNA metabolic process YGR195W
GO:0034661
IEA
PLAZA Integrative OrthologyncRNA catabolic process YGR195W
GO:0090305
IEA
PLAZA Integrative Orthologynucleic acid phosphodiester bond hydrolysis YGR195W
GO:0034427
IEA
PLAZA Integrative Orthologynuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' YGR195W
GO:0051607
IEA
PLAZA Integrative Orthologydefense response to virus FBgn0032487
GO:0071051
IEA
PLAZA Integrative Orthologypolyadenylation-dependent snoRNA 3'-end processing YGR195W
GO:0044085
IEA
PLAZA Integrative Orthologycellular component biogenesis YGR195W
GO:0070481
IEA
PLAZA Integrative Orthologynuclear-transcribed mRNA catabolic process, non-stop decay YGR195W
GO:0006401
IEA
PLAZA Integrative OrthologyRNA catabolic process SPAC3G9.10c
GO:0006369
IEA
PLAZA Integrative Orthologytermination of RNA polymerase II transcription SPAC3G9.10c
GO:0006402
IEA
PLAZA Integrative OrthologymRNA catabolic process SPAC3G9.10c
GO:0051171
IEA
PLAZA Integrative Orthologyregulation of nitrogen compound metabolic process ENSG00000223496
GO:0006364
IEA
PLAZA Integrative OrthologyrRNA processing YGR195W
GO:0043144
IEA
PLAZA Integrative OrthologysnoRNA processing YGR195W
GO:0006366
IEA
PLAZA Integrative Orthologytranscription by RNA polymerase II SPAC3G9.10c
GO:0061013
IEA
PLAZA Integrative Orthologyregulation of mRNA catabolic process ENSG00000223496
GO:0019439
IEA
PLAZA Integrative Orthologyaromatic compound catabolic process SPAC3G9.10c
GO:0031323
IEA
PLAZA Integrative Orthologyregulation of cellular metabolic process ENSG00000223496
GO:0080090
IEA
PLAZA Integrative Orthologyregulation of primary metabolic process ENSG00000223496
GO:0071027
IEA
PLAZA Integrative Orthologynuclear RNA surveillance SPAC3G9.10c
GO:0071029
IEA
PLAZA Integrative Orthologynuclear ncRNA surveillance YGR195W
GO:0032774
IEA
PLAZA Integrative OrthologyRNA biosynthetic process SPAC3G9.10c
GO:0071028
IEA
PLAZA Integrative Orthologynuclear mRNA surveillance SPAC3G9.10c
GO:0000291
IEA
PLAZA Integrative Orthologynuclear-transcribed mRNA catabolic process, exonucleolytic YGR195W
GO:0071025
IEA
PLAZA Integrative OrthologyRNA surveillance SPAC3G9.10c
GO:0016180
IEA
PLAZA Integrative OrthologysnRNA processing YGR195W
GO:0031329
IEA
PLAZA Integrative Orthologyregulation of cellular catabolic process ENSG00000223496
GO:0000288
IEA
PLAZA Integrative Orthologynuclear-transcribed mRNA catabolic process, deadenylation-dependent decay YGR195W
GO:0006950
IEA
PLAZA Integrative Orthologyresponse to stress FBgn0032487
GO:0043412
IEA
PLAZA Integrative Orthologymacromolecule modification ENSG00000223496
GO:0006952
IEA
PLAZA Integrative Orthologydefense response FBgn0032487
GO:0022613
IEA
PLAZA Integrative Orthologyribonucleoprotein complex biogenesis YGR195W
GO:0006399
IEA
PLAZA Integrative OrthologytRNA metabolic process YGR195W
GO:1903311
IEA
PLAZA Integrative Orthologyregulation of mRNA metabolic process ENSG00000223496
GO:0060255
IEA
PLAZA Integrative Orthologyregulation of macromolecule metabolic process SPAC3G9.10c
GO:0051704
IEA
PLAZA Integrative Orthologymulti-organism process FBgn0032487
GO:0071038
IEA
PLAZA Integrative Orthologynuclear polyadenylation-dependent tRNA catabolic process YGR195W
GO:0016078
IEA
PLAZA Integrative OrthologytRNA catabolic process YGR195W
GO:0019222
IEA
PLAZA Integrative Orthologyregulation of metabolic process SPAC3G9.10c
GO:0071039
IEA
PLAZA Integrative Orthologynuclear polyadenylation-dependent CUT catabolic process YGR195W
GO:0071034
IEA
PLAZA Integrative OrthologyCUT catabolic process YGR195W
GO:0016075
IEA
PLAZA Integrative OrthologyrRNA catabolic process YGR195W
GO:0016074
IEA
PLAZA Integrative OrthologysnoRNA metabolic process YGR195W
GO:0016073
IEA
PLAZA Integrative OrthologysnRNA metabolic process YGR195W
GO:0016072
IEA
PLAZA Integrative OrthologyrRNA metabolic process YGR195W
GO:0018130
IEA
PLAZA Integrative Orthologyheterocycle biosynthetic process SPAC3G9.10c
GO:0016071
IEA
PLAZA Integrative OrthologymRNA metabolic process SPAC3G9.10c
GO:0071031
IEA
PLAZA Integrative Orthologynuclear mRNA surveillance of mRNA 3'-end processing SPAC3G9.10c
GO:0006304
IEA
PLAZA Integrative OrthologyDNA modification ENSG00000223496
GO:0043487
IEA
PLAZA Integrative Orthologyregulation of RNA stability ENSG00000223496
GO:0009894
IEA
PLAZA Integrative Orthologyregulation of catabolic process ENSG00000223496
GO:0043488
IEA
PLAZA Integrative Orthologyregulation of mRNA stability ENSG00000223496
GO:0043928
IEA
PLAZA Integrative Orthologyexonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay YGR195W
GO:0000956
IEA
PLAZA Integrative Orthologynuclear-transcribed mRNA catabolic process SPAC3G9.10c
GO:0051707
IEA
PLAZA Integrative Orthologyresponse to other organism FBgn0032487
GO:1901362
IEA
PLAZA Integrative Orthologyorganic cyclic compound biosynthetic process SPAC3G9.10c
GO:0009892
IEA
PLAZA Integrative Orthologynegative regulation of metabolic process SPAC3G9.10c
GO:1901361
IEA
PLAZA Integrative Orthologyorganic cyclic compound catabolic process SPAC3G9.10c
GO:0019219
IEA
PLAZA Integrative Orthologyregulation of nucleobase-containing compound metabolic process ENSG00000223496
GO:0097659
IEA
PLAZA Integrative Orthologynucleic acid-templated transcription SPAC3G9.10c
GO:0051252
IEA
PLAZA Integrative Orthologyregulation of RNA metabolic process ENSG00000223496
GO:0043634
IEA
PLAZA Integrative Orthologypolyadenylation-dependent ncRNA catabolic process YGR195W
GO:0002376
IEA
PLAZA Integrative Orthologyimmune system process FBgn0032487
GO:0043632
IEA
PLAZA Integrative Orthologymodification-dependent macromolecule catabolic process YGR195W
GO:0000466
IEA
PLAZA Integrative Orthologymaturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) YGR195W
GO:0043633
IEA
PLAZA Integrative Orthologypolyadenylation-dependent RNA catabolic process YGR195W
GO:0000467
IEA
PLAZA Integrative Orthologyexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) YGR195W
GO:0002252
IEA
PLAZA Integrative Orthologyimmune effector process FBgn0032487
GO:0000469
IEA
PLAZA Integrative Orthologycleavage involved in rRNA processing YGR195W
GO:0090501
IEA
PLAZA Integrative OrthologyRNA phosphodiester bond hydrolysis YGR195W
GO:0065008
IEA
PLAZA Integrative Orthologyregulation of biological quality ENSG00000223496
GO:0090503
IEA
PLAZA Integrative OrthologyRNA phosphodiester bond hydrolysis, exonucleolytic YGR195W
GO:0065007
IEA
PLAZA Integrative Orthologybiological regulation SPAC3G9.10c
GO:0000184
IEA
PLAZA Integrative Orthologynuclear-transcribed mRNA catabolic process, nonsense-mediated decay YGR195W
GO:0050794
IEA
PLAZA Integrative Orthologyregulation of cellular process ENSG00000223496
GO:0000460
IEA
PLAZA Integrative Orthologymaturation of 5.8S rRNA YGR195W
GO:0048519
IEA
PLAZA Integrative Orthologynegative regulation of biological process SPAC3G9.10c
GO:0045006
IEA
PLAZA Integrative OrthologyDNA deamination ENSG00000223496
GO:0000459
IEA
PLAZA Integrative Orthologyexonucleolytic trimming involved in rRNA processing YGR195W
GO:0042254
IEA
PLAZA Integrative Orthologyribosome biogenesis YGR195W
GO:0034472
IEA
PLAZA Integrative OrthologysnRNA 3'-end processing YGR195W
GO:0034473
IEA
PLAZA Integrative OrthologyU1 snRNA 3'-end processing YGR195W
GO:0034475
IEA
PLAZA Integrative OrthologyU4 snRNA 3'-end processing YGR195W
GO:0043628
IEA
PLAZA Integrative OrthologyncRNA 3'-end processing YGR195W
GO:0034470
IEA
PLAZA Integrative OrthologyncRNA processing YGR195W

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
ISS
Gene OntologyRNA binding1
GO:0000175
ISS
Gene Ontology3'-5'-exoribonuclease activity1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
IDA
Gene Ontologycytosol2 3
GO:0005737
ISM
Gene Ontologycytoplasm4
GO:0035327
IEA
PLAZA Integrative Orthologytranscriptionally active chromatin FBgn0032487
GO:0005816
IEA
PLAZA Integrative Orthologyspindle pole body SPAC3G9.10c
GO:0044430
IEA
PLAZA Integrative Orthologycytoskeletal part SPAC3G9.10c
GO:0070013
IEA
PLAZA Integrative Orthologyintracellular organelle lumen SPAC3G9.10c
GO:0005815
IEA
PLAZA Integrative Orthologymicrotubule organizing center SPAC3G9.10c
GO:0044427
IEA
PLAZA Integrative Orthologychromosomal part SPAC3G9.10c
GO:0044422
IEA
PLAZA Integrative Orthologyorganelle part SPAC3G9.10c
GO:0044428
IEA
PLAZA Integrative Orthologynuclear part SPAC3G9.10c
GO:0005654
IEA
PLAZA Integrative Orthologynucleoplasm ENSG00000223496
GO:0005652
IEA
PLAZA Integrative Orthologynuclear lamina FBgn0032487
GO:1902494
IEA
PLAZA Integrative Orthologycatalytic complex SPAC3G9.10c
GO:0032991
IEA
PLAZA Integrative Orthologyprotein-containing complex SPAC3G9.10c
GO:0000790
IEA
PLAZA Integrative Orthologynuclear chromatin SPAC3G9.10c
GO:0000785
IEA
PLAZA Integrative Orthologychromatin SPAC3G9.10c
GO:1905354
IEA
PLAZA Integrative Orthologyexoribonuclease complex SPAC3G9.10c
GO:0015630
IEA
PLAZA Integrative Orthologymicrotubule cytoskeleton SPAC3G9.10c
GO:0034399
IEA
PLAZA Integrative Orthologynuclear periphery FBgn0032487
GO:0005856
IEA
PLAZA Integrative Orthologycytoskeleton SPAC3G9.10c
GO:0000176
IEA
PLAZA Integrative Orthologynuclear exosome (RNase complex) YGR195W
GO:0000177
IEA
PLAZA Integrative Orthologycytoplasmic exosome (RNase complex) YGR195W
GO:0031974
IEA
PLAZA Integrative Orthologymembrane-enclosed lumen SPAC3G9.10c
GO:0044732
IEA
PLAZA Integrative Orthologymitotic spindle pole body SPAC3G9.10c
GO:0005694
IEA
PLAZA Integrative Orthologychromosome SPAC3G9.10c
GO:0044454
IEA
PLAZA Integrative Orthologynuclear chromosome part SPAC3G9.10c
GO:0031981
IEA
PLAZA Integrative Orthologynuclear lumen SPAC3G9.10c
GO:0005634
IEA
PLAZA Integrative Orthologynucleus SPAC3G9.10c
GO:0044446
IEA
PLAZA Integrative Orthologyintracellular organelle part SPAC3G9.10c
GO:0000228
IEA
PLAZA Integrative Orthologynuclear chromosome SPAC3G9.10c
GO:0043232
IEA
PLAZA Integrative Orthologyintracellular non-membrane-bounded organelle SPAC3G9.10c
GO:0043233
IEA
PLAZA Integrative Orthologyorganelle lumen SPAC3G9.10c
GO:0043231
IEA
PLAZA Integrative Orthologyintracellular membrane-bounded organelle SPAC3G9.10c
GO:0000178
IEA
PLAZA Integrative Orthologyexosome (RNase complex) SPAC3G9.10c
GO:0043227
IEA
PLAZA Integrative Orthologymembrane-bounded organelle SPAC3G9.10c
GO:0043228
IEA
PLAZA Integrative Orthologynon-membrane-bounded organelle SPAC3G9.10c
GO:0043226
IEA
PLAZA Integrative Orthologyorganelle SPAC3G9.10c
GO:0043229
IEA
PLAZA Integrative Orthologyintracellular organelle SPAC3G9.10c

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR027408PNPase/RNase PH domain superfamily
IPR001247Exoribonuclease, phosphorolytic domain 1
IPR015847Exoribonuclease, phosphorolytic domain 2
IPR020568Ribosomal protein S5 domain 2-type fold

No MapMan annotations defined for this gene.
KeggID Description
K11600RRP41, EXOSC4, SKI6; exosome complex component RRP41
No chloroplast target sequence found.