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Interactive Phylogenetics Module
BLAST
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Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
AT3G08947
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
AT3G08947
Arabidopsis thaliana
0.0e+00
1709.5
874
100.0
AT3G08943
Arabidopsis thaliana
0.0e+00
1649.0
870
97.2
Pp3c7_5160
Physcomitrella patens
0.0e+00
1125.9
873
65.5
Pp3c11_26710
Physcomitrella patens
0.0e+00
1122.8
874
65.6
AT5G53480
Arabidopsis thaliana
2.2e-291
1003.0
871
59.7
tho198140
Thalassiosira oceanica
2.8e-185
650.6
890
41.3
emh653510
Emiliania huxleyi
2.6e-183
644.0
910
40.7
emh122780
Emiliania huxleyi
2.6e-183
644.0
910
40.7
CC00G60180
Cyclotella cryptica
4.4e-183
643.3
886
41.0
CC00G195740
Cyclotella cryptica
4.4e-183
643.3
886
41.0
Naga_100038g31
Nannochloropsis gaditana
1.3e-177
625.2
895
40.0
tps142460
Thalassiosira pseudonana
1.8e-176
621.3
816
42.4
AA0063G00130
Aureococcus anophagefferens
4.6e-172
606.7
835
42.3
gsu48080
Galdieria sulphuraria
1.9e-170
601.3
885
40.7
Cre01.g034000
Chlamydomonas reinhardtii
8.1e-169
595.9
850
39.6
Ec-00_001960
Ectocarpus siliculosus
2.9e-166
587.4
830
38.0
AA0039G00320
Aureococcus anophagefferens
7.9e-164
579.3
785
43.1
ENSG00000108424
Homo sapiens
6.3e-161
569.7
894
37.8
SPAC1B1.03c
Schizosaccharomyces pombe
7.2e-157
556.2
878
38.3
Sro1968_g308410
Seminavis robusta
6.7e-155
549.7
876
37.6
sya00G98290
Synedra acus
9.0e-152
539.3
878
35.6
FBgn0262743
Drosophila melanogaster
1.0e-147
525.8
891
35.6
PSNMU-V1.4_AUG-EV-PASAV3_0069450
Pseudo-nitzschia multistriata
3.2e-141
504.2
890
35.3
ps00G137390
Pseudo-nitzschia multiseries
8.2e-137
489.6
874
34.8
ptri54800
Phaeodactylum tricornutum
6.5e-134
479.9
888
33.2
gene14613
Fragilariopsis cylindrus
8.5e-134
479.6
820
34.8
gene15143
Fragilariopsis cylindrus
8.5e-134
479.6
820
34.8
WBGene00002075
Caenorhabditis elegans
1.4e-128
462.2
856
34.5
fso84520
Fistulifera solaris
1.8e-123
445.3
878
32.2
CM15G00560
Cyanidioschyzon merolae
2.0e-122
441.8
900
31.7
fso170170
Fistulifera solaris
2.6e-122
441.4
879
32.1
ccr103620
Chondrus crispus
5.7e-114
413.7
700
36.9
pte295450
Paramecium tetraurelia
3.5e-47
191.8
807
21.8
pte76110
Paramecium tetraurelia
6.7e-46
187.6
808
22.4
pte573970
Paramecium tetraurelia
2.2e-41
172.6
798
21.9
AT2G16950
Arabidopsis thaliana
6.5e-25
117.9
547
23.8
Ec-10_003170
Ectocarpus siliculosus
6.3e-20
101.3
780
21.8
WBGene00002076
Caenorhabditis elegans
1.6e-18
96.7
794
20.9
Cre12.g520550
Chlamydomonas reinhardtii
1.7e-17
93.2
549
23.1
Pp3c4_7610
Physcomitrella patens
4.1e-11
72.0
401
23.2
SPAC2F3.06c
Schizosaccharomyces pombe
4.1e-11
72.0
762
18.5
AT4G27640
Arabidopsis thaliana
5.9e-10
68.2
410
22.9
AT2G16960
Arabidopsis thaliana
7.7e-10
67.8
253
28.1
ps00G33740
Pseudo-nitzschia multiseries
2.2e-09
66.2
536
21.6
PSNMU-V1.4_AUG-EV-PASAV3_0108760
Pseudo-nitzschia multistriata
8.8e-06
54.3
748
19.3
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (1 genes)
Thalassiosira pseudonana (1 genes)
Thalassiosira oceanica (1 genes)
Pseudo-nitzschia multiseries (2 genes)
Fistulifera solaris (2 genes)
Fragilariopsis cylindrus (2 genes)
Cyclotella cryptica (2 genes)
Aureococcus anophagefferens (2 genes)
Ectocarpus siliculosus (2 genes)
Nannochloropsis gaditana (1 genes)
Homo sapiens (1 genes)
Drosophila melanogaster (1 genes)
Caenorhabditis elegans (2 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (2 genes)
Arabidopsis thaliana (6 genes)
Cyanidioschyzon merolae (1 genes)
Chondrus crispus (1 genes)
Galdieria sulphuraria (1 genes)
Emiliania huxleyi (2 genes)
Paramecium tetraurelia (3 genes)
Seminavis robusta (1 genes)
Synedra acus (1 genes)
Physcomitrella patens (3 genes)
Chlamydomonas reinhardtii (2 genes)
Pseudo-nitzschia multistriata (2 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
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Positions and Genes
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