Gene: Zjn_sc00003.1.g10460.1.am.mkhc
General Information
Structural Information
- Species Zoysia japonica ssp. nagirizaki
- Gene Identifier Zjn_sc00003.1.g10460.1.am.mkhc
- Transcript Identifier Zjn_sc00003.1.g10460.1.am.mkhc
- Gene Type Coding gene
- Location Zjn_sc00003.1 : 4782556-4787306 : positive
Gene Family Information
- ID HOM05M001590
- #Genes/#Species 216/53
- Phylogenetic origin
- ID ORTHO05M006504
- #Genes/#Species 80/52
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
Descriptions
- Loading (ortholog descriptions from zma)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0042256 | ISO | PLAZA Integrative Orthology | mature ribosome assembly | AT1G72370 |
| GO:0006970 | ISO | PLAZA Integrative Orthology | response to osmotic stress | AT1G72370 |
| GO:0009651 | ISO | PLAZA Integrative Orthology | response to salt stress | AT1G72370 |
| GO:0006446 | IEA | InterPro | regulation of translational initiation | |
| GO:0006412 | IEA | InterPro | translation |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT1G72370 |
| GO:0003735 | IEA | InterPro | structural constituent of ribosome | |
| GO:0043022 | IEA | InterPro | ribosome binding | |
| GO:0003743 | IEA | InterPro | translation initiation factor activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0022627 | ISO | PLAZA Integrative Orthology | cytosolic small ribosomal subunit | AT1G72370 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT1G72370 |
| GO:0005737 | ISO | PLAZA Integrative Orthology | cytoplasm | AT1G72370 |
| GO:0009506 | ISO | PLAZA Integrative Orthology | plasmodesma | AT1G72370 |
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT1G72370 |
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT1G72370 |
| GO:0042788 | ISO | PLAZA Integrative Orthology | polysomal ribosome | AT1G72370 |
| GO:0005886 | ISO | PLAZA Integrative Orthology | plasma membrane | AT1G72370 |
| GO:0022626 | ISO | PLAZA Integrative Orthology | cytosolic ribosome | AT1G72370 |
| GO:0005852 | IEA | InterPro | eukaryotic translation initiation factor 3 complex | |
| GO:0005840 | IEA | InterPro | ribosome | |
| GO:0015935 | IEA | InterPro | small ribosomal subunit |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR005707 | Ribosomal protein S2, eukaryotic/archaeal |
| IPR001865 | Ribosomal protein S2 |
| IPR016024 | Armadillo-type fold |
| IPR016020 | Translation initiation factor 3, subunit 12, N-terminal, eukaryotic |
| IPR036388 | Winged helix-like DNA-binding domain superfamily |
| IPR033464 | CSN8/PSMD8/EIF3K |
| IPR036390 | Winged helix DNA-binding domain superfamily |
| IPR023591 | Ribosomal protein S2, flavodoxin-like domain superfamily |
| Mapman id | Description |
|---|---|
| 17.1.3.1.1 | Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU proteome.component RPSa |
| 17.4.1.3.11 | Protein biosynthesis.translation initiation.Pre-Initiation Complex (PIC) module.eIF3 mRNA-to-PIC binding complex.component eIF3k |