Gene: Solyc12g020110.2
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc12g020110.2
- Transcript Identifier Solyc12g020110.2.1
- Gene Type Coding gene
- Location SL4.0ch12 : 14178773-14184105 : positive
Gene Family Information
- ID HOM05M000477
- #Genes/#Species 599/53
- Phylogenetic origin
- ID ORTHO05M005248
- #Genes/#Species 90/49
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Solyc12g020110.2.1
- uniprot A0A3Q7J7C4
Descriptions
- Description SNF2_N domain-containing protein/Helicase_C domain-containing protein/HIRAN domain-containing protein/zf-C3HC4_2 domain-containing protein (AHRD V3.3 *** A0A1Q3CI53_CEPFO)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | GOA Database | nucleic acid binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0008270 | IEA | GOA Database | zinc ion binding | |
| GO:0008270 | IEA | InterPro | zinc ion binding | |
| GO:0016818 | IEA | GOA Database | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | |
| GO:0016818 | IEA | InterPro | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | |
| GO:0005524 | IEA | GOA Database | ATP binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0070615 | IEA | GOA Database | nucleosome-dependent ATPase activity | |
| GO:0070615 | IEA | InterPro | nucleosome-dependent ATPase activity | |
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0046872 | IEA | InterPro | metal ion binding | |
| GO:0000166 | IEA | GOA Database | nucleotide binding | |
| GO:0016787 | IEA | GOA Database | hydrolase activity |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| IPR038718 | SNF2-like, N-terminal domain superfamily |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR014905 | HIRAN domain |
| IPR001650 | Helicase, C-terminal |
| IPR001841 | Zinc finger, RING-type |
| IPR000330 | SNF2, N-terminal |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| IPR018957 | Zinc finger, C3HC4 RING-type |
| Mapman id | Description |
|---|---|
| 12.4.8.3.1 | Chromatin organisation.nucleosome remodeling.other chromatin remodeling activities.Rad5/16-like group.chromatin remodeling factor (Rad5) |